Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g01164 ATGGAGGGAAACCGAGGAAGCTTGGAGAGAATTGAAGTAATGAGAAAAATCACAGAGCTCACGAGATCTATGATCGTCGAACTGAGCAATGGAAGCTCCAGGATGATCGCCATCGATCGGTTCAAAAGTTACTGCTCCAATTCCCTTGAAAACTGTTGTTGTAGGTTCAATTTATCTGAAGGGAAGGATGTTCTAACACTTCAAAGGGAAAGCCACGTCCGTAGACTAGATGTCTTGCTTAGAGTTCTGCTCATAATTCAGCAGCTTCTGGGAGAAAATAGACATAGCTCAAAGAGAGATATATATTATATGTATCCCTCTATATTTACAGATCAGTCAGTTGTTGACCGGGCAATCAACGACATCTGCATTCTTTTGCAATGTAGCCGGCATAATCTGAATGTGGTTTCTGTTGGTAATGGGTTGGTGATGGGTTGGTTGAGATTCTCAGAAGCTGGCAGAAGATTTGATTGCTTGAAGAAGCCTAACAGTGCCCACTTTATTCCTGTTCAAGTTGAAGAAGTTATAGGTATGCTGTCTTGCTGA 546 41.94 MEGNRGSLERIEVMRKITELTRSMIVELSNGSSRMIAIDRFKSYCSNSLENCCCRFNLSEGKDVLTLQRESHVRRLDVLLRVLLIIQQLLGENRHSSKRDIYYMYPSIFTDQSVVDRAINDICILLQCSRHNLNVVSVGNGLVMGWLRFSEAGRRFDCLKKPNSAHFIPVQVEEVIGMLSC* 182
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13542400 13544461 - Chy1G011640.1 Chy01g01164 218345

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g01164 181 Pfam Type IIB DNA topoisomerase 74 135 IPR013049 GO:0003677|GO:0003824|GO:0005524|GO:0005694|GO:0006259
Chy01g01164 181 PANTHER MEIOTIC RECOMBINATION PROTEIN SPO11 10 180 IPR002815 GO:0003677|GO:0003918|GO:0005694
Chy01g01164 181 Gene3D - 3 138 IPR036388 -
Chy01g01164 181 PRINTS DNA topoisomerase VI subunit A family signature 130 145 IPR002815 GO:0003677|GO:0003918|GO:0005694
Chy01g01164 181 PRINTS DNA topoisomerase VI subunit A family signature 98 109 IPR002815 GO:0003677|GO:0003918|GO:0005694
Chy01g01164 181 PRINTS DNA topoisomerase VI subunit A family signature 112 129 IPR002815 GO:0003677|GO:0003918|GO:0005694
Chy01g01164 181 PANTHER MEIOTIC RECOMBINATION PROTEIN SPO11-1 10 180 - -
Chy01g01164 181 SUPERFAMILY DNA topoisomerase IV, alpha subunit 73 174 IPR036078 GO:0003677|GO:0005694
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g01164 K10878 SPO11; meiotic recombination protein SPO11 - csv:116405048 331.257
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g01164 Chy-Chr1:13542400 Chy08g00810 Chy-Chr8:15671786 7.76E-17 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g649 . Blo03g01480 . . . Bpe08g01095 . . . . . Cma09g01003 . Car09g00914 . Cpe06g00811 . Bhi09g01751 . . . . Mch11g1260 . . . . . . . . . . . . Lsi02g01841 Csa07g00937 . . . . . . . . Bma07g01249 . . . Cmo09g01003 . . . . . . . . . . . . . Cla09g02064 Cam09g2153 Cec09g2218 . . . . . . Chy01g01164 Cme01g00928
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005619 0 4 1 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 4 1 1 1 1 1 1 3 1 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy01g01164 Chy_Chr01 FPKM 18.970163 24.130016 6.277235 7.002584 3.209394 4.265168 3.660927 1.597071 1.605762 1.283688