Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Chy01g01169 | ATGATGAGGAACTTCTTGTGTTTCCTATGTAGTAACAATAATGGAGGGTTTTTCCCTTGCATCATTGCTCTTGGTTTTCTTCTGCTGTGTGTCACTGGAGGGAGCAGCAGTAGGGGTCGTGGTGGTGTGATCAGTTGGGATGATCTGCGTGTGGATGTTTGGCGGCGGCAGAGGATGAGCTCCAGCGAGGGGTTGGGGAATGGGACCAGAATCATTGTGGTCGATAAAAATTGCTCCGGCGACTCCACCACGGTGCAAGGGGCGGTGGATATGGTTCCTCATAATAACAAACAGAGAGTTAAGATTTATATTCTTCCTGGCATTTACAGGGAGAAGGTATACATACCCATCACCAAGCCATATATTTCCTTGATTGGAAACAAGAATAGAGTTACAGATAGTGTTATTACATGGAACGACAAAGCATCAGACAAAATGGTGGCAAAGCCAGGAGATAAGGGAAGACAAGGCGTAGCATTAAGAATAACAGGAGATAAAGCAATGTTCTATAGAGTGAAATTCTTGGGAGGACAAGATACACTTCTCGATGATTTGGGCACACATTATTACTATCAATGTCACATTCAAGGAAGTGTTGATTTCATTTTTGGTACTGCTAGATCACTCTATGAGCAATGTGTGATAACTTCTACAGCAGAGAGCTATGGAGCAATAGCAGCACATCATCGAGCCTCACCAGACGATGACACCGGTTTCTCCTTCGTACGCTGTGTGATTAATGGAAGTGGGAAAGTATACCTGGGAAGAGCGTGGGGGAACTACTCAAGAACAATATATTCTAACTGCTACATTGAAGATGTAATCAATCCATTAGGATGGAGTGACTGGAATGACCCATCAAGACAAAGGACAGTAGCTTTTGGGCAATATAATTGCAGGGGCAGTGGAGCTAACACTAAAGATTGGGTGCCGTGGGCAAAGACCTTCAACTACGAGGAAGTGAGACCTTTTGTAGATAGGAAATACATCAAAGGAGAACAGTGGCTTAACTTATGA | 1017 | 43.85 | MMRNFLCFLCSNNNGGFFPCIIALGFLLLCVTGGSSSRGRGGVISWDDLRVDVWRRQRMSSSEGLGNGTRIIVVDKNCSGDSTTVQGAVDMVPHNNKQRVKIYILPGIYREKVYIPITKPYISLIGNKNRVTDSVITWNDKASDKMVAKPGDKGRQGVALRITGDKAMFYRVKFLGGQDTLLDDLGTHYYYQCHIQGSVDFIFGTARSLYEQCVITSTAESYGAIAAHHRASPDDDTGFSFVRCVINGSGKVYLGRAWGNYSRTIYSNCYIEDVINPLGWSDWNDPSRQRTVAFGQYNCRGSGANTKDWVPWAKTFNYEEVRPFVDRKYIKGEQWLNL* | 339 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 13596924 | 13600625 | - | Chy1G011690.1 | Chy01g01169 | 218350 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Chy01g01169 | 338 | PANTHER | PECTINESTERASE QRT1 | 28 | 146 | - | - | |
Chy01g01169 | 338 | PANTHER | PECTINESTERASE QRT1 | 145 | 338 | - | - | |
Chy01g01169 | 338 | Gene3D | - | 149 | 338 | IPR012334 | - | |
Chy01g01169 | 338 | Pfam | Pectinesterase | 72 | 139 | IPR000070 | GO:0030599|GO:0042545 | |
Chy01g01169 | 338 | Pfam | Pectinesterase | 150 | 332 | IPR000070 | GO:0030599|GO:0042545 | |
Chy01g01169 | 338 | Gene3D | - | 48 | 148 | IPR012334 | - | |
Chy01g01169 | 338 | PANTHER | ACYL-COA THIOESTER HYDROLASE YBHC-RELATED | 28 | 146 | - | - | |
Chy01g01169 | 338 | PANTHER | ACYL-COA THIOESTER HYDROLASE YBHC-RELATED | 145 | 338 | - | - | |
Chy01g01169 | 338 | ProSitePatterns | Pectinesterase signature 2. | 195 | 204 | IPR033131 | - | |
Chy01g01169 | 338 | SUPERFAMILY | Pectin lyase-like | 70 | 337 | IPR011050 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Chy01g01169 | Chy-Chr1:13596924 | Chy07g01088 | Chy-Chr7:15822713 | 1.52E-79 | dispersed | |
Chy01g01169 | Chy-Chr1:13596924 | Chy03g01447 | Chy-Chr3:17086181 | 2.25E-79 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Chy01g01169 | K01051 | - | csv:101209316 | 645.58 |