Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g01169 ATGATGAGGAACTTCTTGTGTTTCCTATGTAGTAACAATAATGGAGGGTTTTTCCCTTGCATCATTGCTCTTGGTTTTCTTCTGCTGTGTGTCACTGGAGGGAGCAGCAGTAGGGGTCGTGGTGGTGTGATCAGTTGGGATGATCTGCGTGTGGATGTTTGGCGGCGGCAGAGGATGAGCTCCAGCGAGGGGTTGGGGAATGGGACCAGAATCATTGTGGTCGATAAAAATTGCTCCGGCGACTCCACCACGGTGCAAGGGGCGGTGGATATGGTTCCTCATAATAACAAACAGAGAGTTAAGATTTATATTCTTCCTGGCATTTACAGGGAGAAGGTATACATACCCATCACCAAGCCATATATTTCCTTGATTGGAAACAAGAATAGAGTTACAGATAGTGTTATTACATGGAACGACAAAGCATCAGACAAAATGGTGGCAAAGCCAGGAGATAAGGGAAGACAAGGCGTAGCATTAAGAATAACAGGAGATAAAGCAATGTTCTATAGAGTGAAATTCTTGGGAGGACAAGATACACTTCTCGATGATTTGGGCACACATTATTACTATCAATGTCACATTCAAGGAAGTGTTGATTTCATTTTTGGTACTGCTAGATCACTCTATGAGCAATGTGTGATAACTTCTACAGCAGAGAGCTATGGAGCAATAGCAGCACATCATCGAGCCTCACCAGACGATGACACCGGTTTCTCCTTCGTACGCTGTGTGATTAATGGAAGTGGGAAAGTATACCTGGGAAGAGCGTGGGGGAACTACTCAAGAACAATATATTCTAACTGCTACATTGAAGATGTAATCAATCCATTAGGATGGAGTGACTGGAATGACCCATCAAGACAAAGGACAGTAGCTTTTGGGCAATATAATTGCAGGGGCAGTGGAGCTAACACTAAAGATTGGGTGCCGTGGGCAAAGACCTTCAACTACGAGGAAGTGAGACCTTTTGTAGATAGGAAATACATCAAAGGAGAACAGTGGCTTAACTTATGA 1017 43.85 MMRNFLCFLCSNNNGGFFPCIIALGFLLLCVTGGSSSRGRGGVISWDDLRVDVWRRQRMSSSEGLGNGTRIIVVDKNCSGDSTTVQGAVDMVPHNNKQRVKIYILPGIYREKVYIPITKPYISLIGNKNRVTDSVITWNDKASDKMVAKPGDKGRQGVALRITGDKAMFYRVKFLGGQDTLLDDLGTHYYYQCHIQGSVDFIFGTARSLYEQCVITSTAESYGAIAAHHRASPDDDTGFSFVRCVINGSGKVYLGRAWGNYSRTIYSNCYIEDVINPLGWSDWNDPSRQRTVAFGQYNCRGSGANTKDWVPWAKTFNYEEVRPFVDRKYIKGEQWLNL* 339
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13596924 13600625 - Chy1G011690.1 Chy01g01169 218350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g01169 338 PANTHER PECTINESTERASE QRT1 28 146 - -
Chy01g01169 338 PANTHER PECTINESTERASE QRT1 145 338 - -
Chy01g01169 338 Gene3D - 149 338 IPR012334 -
Chy01g01169 338 Pfam Pectinesterase 72 139 IPR000070 GO:0030599|GO:0042545
Chy01g01169 338 Pfam Pectinesterase 150 332 IPR000070 GO:0030599|GO:0042545
Chy01g01169 338 Gene3D - 48 148 IPR012334 -
Chy01g01169 338 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 28 146 - -
Chy01g01169 338 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 145 338 - -
Chy01g01169 338 ProSitePatterns Pectinesterase signature 2. 195 204 IPR033131 -
Chy01g01169 338 SUPERFAMILY Pectin lyase-like 70 337 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g01169 Chy-Chr1:13596924 Chy07g01088 Chy-Chr7:15822713 1.52E-79 dispersed
Chy01g01169 Chy-Chr1:13596924 Chy03g01447 Chy-Chr3:17086181 2.25E-79 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g01169 K01051 - csv:101209316 645.58