Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g01175 ATGGCGGACGTGGTACTGTTGAAGGAGATCGAGGAAACGGCTGGTCGCCTTGGGCTAGATCTCTCCCAAGTTGATTTTGACGCTATTCGTCTCCCACCTGGCGAGGATTTCGGAATCATTAGTGATGATGAAGAGGTTCTGCAAGAGGAGAGTCTAGAGTTTGATTCTGGGTTCGGAAACATTATAGTTGTTGACAATCTTCCGGTTGTTCCTCCGGAGAAGTTTGAGAAGCTCGAAGGTGTTGTTCGTAAAATTTTTGGACAGATTGGAGTAATTAAGGATGATGGTCTATGGATGCCTGTTGACCGTACTACGCAGAAAACTTTAGGTTACTGCTTCATTGAGTACGGCACTCCACAGGAGGCTGAGCTTGCCAAAGAGAAGACTGATGGGTACAAGCTGGATAGAGCACATATTTTCACCGTTAATATGTTTGAGGACTTTGACAGATTTATGAAAGTCCCAGATGAGTGGGCACCTCCTGAAGTTAGCCCATATACTCCTGGGGAAAATCTTCAACAGTGGCTAACTGATGAAAAAGCACGGGATCAGTTTGTTATTCGTGCTGGTTCTGACACTGAGGTATTCTGGAATGATGCCAGGCATTTGAAGCCTGAGCCTGTCTACAAGCGTACATTCTGGACCGAGAGTTTTGTGCAGTGGTCCTCATTGGGGACCTACCTAGCAACAATTCATCGACAGGGTGCTGCAGTTTGGGGTGGAGCAGGTACCTTTAATCGTTTGATGCGCTTTGCCCATCAACAGGTTAAGTTAATTGATTTCTCTCCTGGTGAGAAATATCTAGTAACTTACAGCAGCCATGAACCCAGCAATCCACGTGATGCAAATAGGATTGTGATCAATATTTTTGATGTGAGAACTGGAAAAGTGATGAGAGATTTCAAGGGAAGTCCTGATGATTTTGCCATTGGAGGAACTGGTGGTGTTGCTGGGGTATCTTGGCCTGTTTTTAGGTGGGGTGGTGGTAAAGATGATAAATACTTTGCCAGGATTGGAAAGAATGTGATTTCAGTCTATGAAACAGAGACTTTCTCCCTTATTGACAAAAAGTCTTTGAAGGTTGAAAATGTTATGGATTTTTGCTGGTCCCCTACAGATCCCATTATTGCACTATTTGTTCCTGAGCTAGGTGGTGGGAACCAACCTGCTAGGGTGAGTCTTGTCCAAATCCCCAGCAAGGAGGAGTTGAGACAGAAAAATCTTTTCAGTGTTAGCGATTGCAAAATGTACTGGCAAAGCAATGGGGATTATCTTGCCGTCAAGGTTGATAGATATACAAAGACAAAGAAAAGCACATACACGGGGTTTGAGCTTTTCCGCATAAAAGAGCGGGATATTCCCATTGAAGTGTTGGAGCTTGAGAATAAGAATGACAAGATCATTGCCTTTGCTTGGGAGCCAAAGGGGCACAGATTTGCAGTTATTCATGGTGACAACCCAAGGCCAGATATTAGCTTTTACTCTATGCGAAGCACAAACAACAGTGGCCGAGTGTCGAAACTTGCAACTCTCAAAGGAAAGCAGGCCAATGCTCTTTTCTGGTCACCTGCAGGACGATTCATTATTCTTGCTGGTCTGAAAGGTTTCAATGGACAGTTGGAATTCTACAATGTTGATGAGCTGGAGACAATGGCTACCGCAGAGCATTTCATGGCTACTGATATTGAATGGGATCCTACTGGAAGGTACGTTGCAACTGCTGTAACTTCAGTCCATGAGATGGAAAATGGTTTCAACATTTGGTCCTTTAATGGAAAACTCCTCTATCGAATCTTGAAGGATCATTTCTTTCAGTTCGCATGGCGGCCGAGGCCACCATCCTTCTTGAGTCCAGAAAAAGAGGAAGAGATAGCGAAGAATTTGAAGAAGTACAGCAAGAAGTACGAGGCTGAAGATCAGGACGTATCTATGCTATTGAGTGAGCAGGAGCGTGAGAGACGAAGAATGTTGAAGGATGAGTGGGACAAGTGGGTGAATGAATGGAAGAGATTGCACGAAGAAGAGAAGTTGTTACGGCAGAAGCTGCAGGATGGTGAAGTCAGTGATGAAGAAGAGGAATATGAAGCCAAAGAAGTCGAAGTCGAGGAGATTTTGGATGTATCGGAGGAAGTTTTGTCCTTTGATTTTGGGCAGTAA 2157 44.37 MADVVLLKEIEETAGRLGLDLSQVDFDAIRLPPGEDFGIISDDEEVLQEESLEFDSGFGNIIVVDNLPVVPPEKFEKLEGVVRKIFGQIGVIKDDGLWMPVDRTTQKTLGYCFIEYGTPQEAELAKEKTDGYKLDRAHIFTVNMFEDFDRFMKVPDEWAPPEVSPYTPGENLQQWLTDEKARDQFVIRAGSDTEVFWNDARHLKPEPVYKRTFWTESFVQWSSLGTYLATIHRQGAAVWGGAGTFNRLMRFAHQQVKLIDFSPGEKYLVTYSSHEPSNPRDANRIVINIFDVRTGKVMRDFKGSPDDFAIGGTGGVAGVSWPVFRWGGGKDDKYFARIGKNVISVYETETFSLIDKKSLKVENVMDFCWSPTDPIIALFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSNGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELENKNDKIIAFAWEPKGHRFAVIHGDNPRPDISFYSMRSTNNSGRVSKLATLKGKQANALFWSPAGRFIILAGLKGFNGQLEFYNVDELETMATAEHFMATDIEWDPTGRYVATAVTSVHEMENGFNIWSFNGKLLYRILKDHFFQFAWRPRPPSFLSPEKEEEIAKNLKKYSKKYEAEDQDVSMLLSEQERERRRMLKDEWDKWVNEWKRLHEEEKLLRQKLQDGEVSDEEEEYEAKEVEVEEILDVSEEVLSFDFGQ* 719
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13663228 13667381 + Chy1G011750.1 Chy01g01175 218356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g01175 718 CDD RRM_eIF3B 59 143 IPR034363 -
Chy01g01175 718 PANTHER BNACNNG51870D PROTEIN 8 712 - -
Chy01g01175 718 PIRSF Transl_init_eIF3b 8 713 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Chy01g01175 718 SMART rrm1_1 61 143 IPR000504 GO:0003723
Chy01g01175 718 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 82 136 IPR000504 GO:0003723
Chy01g01175 718 SUPERFAMILY RNA-binding domain, RBD 58 141 IPR035979 GO:0003676
Chy01g01175 718 Gene3D - 437 617 IPR015943 GO:0005515
Chy01g01175 718 SUPERFAMILY DPP6 N-terminal domain-like 217 600 - -
Chy01g01175 718 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 60 147 IPR000504 GO:0003723
Chy01g01175 718 Pfam Eukaryotic translation initiation factor eIF2A 406 606 IPR013979 -
Chy01g01175 718 Coils Coil 687 707 - -
Chy01g01175 718 Gene3D - 55 154 IPR012677 -
Chy01g01175 718 Hamap Eukaryotic translation initiation factor 3 subunit B [EIF3B]. 48 713 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Chy01g01175 718 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 EIF3 -RELATED 8 712 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Chy01g01175 718 Gene3D - 180 430 IPR015943 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g01043 Chy-Chr1:11393077 Chy01g01175 Chy-Chr1:13663228 0 dispersed
Chy01g01175 Chy-Chr1:13663228 Chy07g01498 Chy-Chr7:19258692 2.49E-25 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g01175 K03253 - csv:101213144 1447.95