Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g01179 ATGGCAGTTATATTGTGTGTTAAGCAGGTTTCCTTTAAAACCAAAGTCTATCACCCTAACATCAACAACAATGGAAGTATCTGCCTTGACATTTTGAAAGAGCAATGGAGCCCTGCTCTTACTGTTTCCAAGGTGTTATTGTCGATATGCTCACTGCTAACGGACCCAAATCCAGATGATCCATTGGTTCCAAATATAGCTCACATGTACAAAAATGACAGAGCCAAGTACGAAAATACTGCCCGATCTTGGACCCAGAAGTATGCGATGGGCTAA 276 41.67 MAVILCVKQVSFKTKVYHPNINNNGSICLDILKEQWSPALTVSKVLLSICSLLTDPNPDDPLVPNIAHMYKNDRAKYENTARSWTQKYAMG* 92
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13700370 13707074 + Chy1G011790.1 Chy01g01179 218360

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g01179 91 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 17 32 IPR023313 -
Chy01g01179 91 PANTHER BNAA01G32320D PROTEIN 9 88 - -
Chy01g01179 91 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 9 88 - -
Chy01g01179 91 CDD UBCc 9 85 IPR000608 -
Chy01g01179 91 Pfam Ubiquitin-conjugating enzyme 9 84 IPR000608 -
Chy01g01179 91 Gene3D Ubiquitin Conjugating Enzyme 7 91 IPR016135 -
Chy01g01179 91 SMART ubc_7 1 90 - -
Chy01g01179 91 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 1 90 IPR000608 -
Chy01g01179 91 SUPERFAMILY UBC-like 10 90 IPR016135 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g01179 K06689 UBE2D, UBC4, UBC5; ubiquitin-conjugating enzyme E2 D [EC:2.3.2.23] - csv:101214912 171.014
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g01179 Chy-Chr1:13700370 Chy11g01174 Chy-Chr11:17859305 1.63E-52 dispersed
Chy01g01179 Chy-Chr1:13700370 Chy09g01418 Chy-Chr9:15806255 1.27E-52 transposed
Chy01g01179 Chy-Chr1:13700370 Chy06g01271 Chy-Chr6:11688040 1.27E-51 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g732 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy01g01179 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000093 10 14 5 8 10 8 7 6 4 8 8 6 9 8 9 10 7 11 12 3 8 8 10 7 4 8 8 13 15 7 251
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy01g01179 Chy_Chr01 FPKM 0.0 0.0 0.108189 0.0 0.122612 0.136773 0.0 0.096491 0.0 0.0