Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g01284 ATGCTGATGGACCCTAATTTCTCGTCGGCGAAGCCACCGCATCCGGTGGCGATGGACATCGAACATATGCCGGAAAATCCTCATCGTGCTTCCCACCACCGCCGCTCCCACTCCGACACTTCCTTTCGCTTCCCAAACCTTGATGAACTTCTCTTCTTCGACCCTTCAGAGCTCGACCTCTCCATGCTCTCTTCGCCTTCTTCTCCCCCTACTGCCACCACTCCCATCGCCGTTAATTCCTCTAATGCCAAATTTTCTGATGACGCCGTTCGCCCTAAGCCCGAGCCGATTGCCTCTGGACCTTTTGGTGGTCACTTGCGGAGCTTGTCTATGGACTCTGATTTCTTCAAGAATTTGGACCTTGGTGGTGATAGTGGGGAAATTGATTCTTTGGGGAAGAAGACTCCGGTGAGTGAACAACGGCCAGTTCGTCATCGACATAGCTTATCCATGGATGGTTCTTCGTCGTCGTTTGAGGCTGATTCAACCCTAGTAATTGATGGAGTGAAGAAGGCGATGGACCCGGAGAGACTTGCGGAGCTTGCCCTAATTGACCCGAAAAGAGCTAAAAGGATTCTTGCGAACAGACAATCTGCGGCTCGTTCGAAAGAGAGGAAGATACGATATACGAATGAACTGGAGAGAAAGGTTCAGACTCTGCAGTCCGAAGCTACCACTCTGTCTGCGCAGGTGACCATTCTACAGCGAGATACTAGTGGATTAACTGTGGAAAATAAGGAACTCAAACTTCGGTTACAGGCTATGGAGCAACAAGCACAACTTCGAGATGCTCTGAGTGAAGCTTTGAAGGAAGAAGTTCAACGACTTAGAATTGCCGCAGGCCAGGTTGCATCAATCAATGGAAATCCTTTCAACCGACCTCTGCAATATCCTTCATCCCGACCACCTGTACACCATTTTAGTAGCTCCCATACTCAGCAGGGTCAACAGCAGCCACCACCCATGTTGGCTACCAACCAGCAGCAATCAGACCCGAAATGGACAAACTCCTCTCAGCTTCTCAGTCGAAGTCCCAACGGCGAAACAAAGCCTTAG 1056 50.19 MLMDPNFSSAKPPHPVAMDIEHMPENPHRASHHRRSHSDTSFRFPNLDELLFFDPSELDLSMLSSPSSPPTATTPIAVNSSNAKFSDDAVRPKPEPIASGPFGGHLRSLSMDSDFFKNLDLGGDSGEIDSLGKKTPVSEQRPVRHRHSLSMDGSSSSFEADSTLVIDGVKKAMDPERLAELALIDPKRAKRILANRQSAARSKERKIRYTNELERKVQTLQSEATTLSAQVTILQRDTSGLTVENKELKLRLQAMEQQAQLRDALSEALKEEVQRLRIAAGQVASINGNPFNRPLQYPSSRPPVHHFSSSHTQQGQQQPPPMLATNQQQSDPKWTNSSQLLSRSPNGETKP* 352
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 16197847 16200513 - Chy1G012840.1 Chy01g01284 218465

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g01284 351 Coils Coil 238 258 - -
Chy01g01284 351 Coils Coil 210 230 - -
Chy01g01284 351 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 7 330 - -
Chy01g01284 351 Gene3D - 186 239 - -
Chy01g01284 351 MobiDBLite consensus disorder prediction 1 20 - -
Chy01g01284 351 MobiDBLite consensus disorder prediction 287 351 - -
Chy01g01284 351 CDD bZIP_plant_RF2 188 237 IPR044759 GO:0003700|GO:0006355
Chy01g01284 351 Pfam bZIP transcription factor 187 234 IPR004827 GO:0003700|GO:0006355
Chy01g01284 351 SUPERFAMILY Leucine zipper domain 187 238 IPR046347 GO:0003700|GO:0006355
Chy01g01284 351 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 185 248 IPR004827 GO:0003700|GO:0006355
Chy01g01284 351 MobiDBLite consensus disorder prediction 302 351 - -
Chy01g01284 351 SMART brlzneu 183 247 IPR004827 GO:0003700|GO:0006355
Chy01g01284 351 PANTHER BASIC-LEUCINE ZIPPER (BZIP) TRANSCRIPTION FACTOR FAMILY PROTEIN-RELATED 7 330 - -
Chy01g01284 351 MobiDBLite consensus disorder prediction 126 155 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g01284 K20557 VIP1; transcription factor VIP1 - csv:101207973 635.18
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g01284 Chy-Chr1:16197847 Chy03g00519 Chy-Chr3:7178412 2.30E-125 dispersed
Chy01g01284 Chy-Chr1:16197847 Chy11g00653 Chy-Chr11:7905677 7.59E-21 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy03g01222 . 88 323 bZIP Transcription Factor Family AT5G24800 50.6 2.3e-45 179.5
Chy06g02175 CCT 34 349 bZIP Transcription Factor Family AT2G35530 67.8 6.6e-105 377.9
Chy04g00130 CCT 1 344 bZIP Transcription Factor Family AT2G35530 61.7 4.9e-100 361.7
Chy10g00314 . 16 325 bZIP Transcription Factor Family AT2G40620 59.3 1.5e-84 310.1
Chy11g01164 . 65 397 bZIP Transcription Factor Family AT2G40620 50.3 1.8e-69 260.0
Chy03g00519 . 170 321 bZIP Transcription Factor Family AT2G40620 65.8 1.9e-42 170.2
Chy01g00730 . 384 518 bZIP Transcription Factor Family AT2G40620 67.1 2.8e-38 156.4
Chy11g00253 CCT 1 233 bZIP Transcription Factor Family AT4G35040 62.6 3.3e-65 245.4
Chy01g00682 CCT 1 265 bZIP Transcription Factor Family AT4G35040 58.2 3.2e-60 228.8
Chy03g00855 CCT 6 334 bZIP Transcription Factor Family AT5G06950 80.7 8.7e-140 493.4
Chy10g01378 CCT 21 352 bZIP Transcription Factor Family AT5G06950 75.9 1.3e-130 463.0
Chy04g01664 . 136 468 bZIP Transcription Factor Family AT5G06950 73.0 8.2e-122 433.7
Chy03g00328 . 392 724 bZIP Transcription Factor Family AT5G06950 69.9 7.1e-118 420.6
Chy04g01760 . 146 440 bZIP Transcription Factor Family AT5G06950 60.6 3.9e-92 335.1
Chy07g01307 . 78 360 bZIP Transcription Factor Family AT5G06950 54.7 1.2e-75 280.4
Chy03g00061 . 107 412 bZIP Transcription Factor Family AT5G06950 50.6 1.6e-72 270.0
Chy11g00902 . 384 625 bZIP Transcription Factor Family AT5G06950 54.8 2.0e-67 253.1
Chy03g00855 CCT 46 333 bZIP Transcription Factor Family AT1G08320 63.2 4.0e-98 355.1
Chy04g01760 . 123 440 bZIP Transcription Factor Family AT1G08320 58.8 8.3e-96 347.4
Chy04g01664 . 177 467 bZIP Transcription Factor Family AT1G08320 60.8 5.0e-93 338.2
Chy10g01378 CCT 64 351 bZIP Transcription Factor Family AT1G08320 60.4 1.2e-91 333.6
Chy03g00328 . 430 723 bZIP Transcription Factor Family AT1G08320 58.2 6.8e-90 327.8
Chy11g00902 . 382 623 bZIP Transcription Factor Family AT1G08320 64.5 2.0e-81 299.7
Chy11g00253 CCT 1 260 bZIP Transcription Factor Family AT2G16770 59.0 1.5e-64 243.0
Chy01g00682 CCT 1 265 bZIP Transcription Factor Family AT2G16770 57.5 2.5e-62 235.7
Chy03g00855 CCT 25 334 bZIP Transcription Factor Family AT5G06960 81.0 1.3e-129 459.5
Chy10g01378 CCT 52 352 bZIP Transcription Factor Family AT5G06960 77.1 9.4e-120 426.8
Chy04g01664 . 157 468 bZIP Transcription Factor Family AT5G06960 70.9 2.3e-110 395.6
Chy03g00328 . 418 724 bZIP Transcription Factor Family AT5G06960 68.4 2.0e-106 382.5
Chy04g01760 . 132 440 bZIP Transcription Factor Family AT5G06960 59.9 2.0e-90 329.3
Chy07g01307 . 53 360 bZIP Transcription Factor Family AT5G06960 51.9 7.8e-74 274.2
Chy11g00902 . 384 625 bZIP Transcription Factor Family AT5G06960 54.8 4.9e-68 255.0
Chy01g00730 . 1 566 bZIP Transcription Factor Family AT4G38900 56.5 5.8e-133 471.5
Chy03g00519 . 115 306 bZIP Transcription Factor Family AT4G38900 54.4 1.4e-38 157.9
Chy01g01284 . 101 282 bZIP Transcription Factor Family AT4G38900 55.4 2.7e-37 153.7
Chy10g00314 . 123 237 bZIP Transcription Factor Family AT4G38900 76.5 7.8e-37 152.1
Chy01g01284 . 101 282 bZIP Transcription Factor Family AT2G21230 56.8 5.2e-38 156.0
Chy01g00455 CCT,ECH 1 263 bZIP Transcription Factor Family AT2G42380 58.2 5.5e-68 254.6
Chy03g01549 . 27 353 bZIP Transcription Factor Family AT1G45249 55.8 1.9e-83 306.6
Chy03g00502 . 67 259 bZIP Transcription Factor Family AT1G03970 56.2 3.8e-40 162.2
Chy03g00855 CCT 6 334 bZIP Transcription Factor Family AT3G12250 80.9 1.5e-139 492.7
Chy10g01378 CCT 21 352 bZIP Transcription Factor Family AT3G12250 75.6 1.4e-129 459.5
Chy04g01664 . 136 468 bZIP Transcription Factor Family AT3G12250 73.4 1.1e-121 433.3
Chy03g00328 . 392 724 bZIP Transcription Factor Family AT3G12250 69.1 2.3e-116 415.6
Chy04g01760 . 146 440 bZIP Transcription Factor Family AT3G12250 59.9 4.4e-91 331.6
Chy07g01307 . 47 360 bZIP Transcription Factor Family AT3G12250 52.1 5.2e-76 281.6
Chy11g00902 . 384 625 bZIP Transcription Factor Family AT3G12250 56.0 1.0e-68 257.3
Chy03g00328 . 272 724 bZIP Transcription Factor Family AT1G68640 62.6 1.4e-143 506.5
Chy03g00855 CCT 6 334 bZIP Transcription Factor Family AT1G68640 67.5 1.2e-115 413.7
Chy04g01664 . 134 468 bZIP Transcription Factor Family AT1G68640 66.0 1.0e-111 400.6
Chy10g01378 CCT 18 352 bZIP Transcription Factor Family AT1G68640 64.2 1.7e-109 393.3
Chy04g01760 . 134 440 bZIP Transcription Factor Family AT1G68640 55.3 4.0e-87 318.9
Chy03g00519 . 31 345 bZIP Transcription Factor Family AT1G43700 53.8 9.2e-68 254.2
Chy01g01284 . 12 293 bZIP Transcription Factor Family AT1G43700 52.1 2.8e-64 242.7
Chy06g00123 . 11 421 bZIP Transcription Factor Family AT2G46270 50.1 1.1e-79 293.9
Chy06g00824 . 42 383 bZIP Transcription Factor Family AT2G31370 66.0 1.2e-106 383.6
Chy06g00833 . 45 360 bZIP Transcription Factor Family AT2G31370 67.0 1.0e-102 370.5
Chy10g00314 . 25 248 bZIP Transcription Factor Family AT2G31370 52.2 3.2e-48 189.5
Chy01g00455 CCT,ECH 1 263 bZIP Transcription Factor Family AT3G58120 52.4 2.0e-63 239.6
Chy06g02175 CCT 27 351 bZIP Transcription Factor Family AT1G32150 65.5 1.4e-99 360.1
Chy04g00130 CCT 1 345 bZIP Transcription Factor Family AT1G32150 60.2 9.1e-96 347.4
Chy06g00824 . 10 379 bZIP Transcription Factor Family AT1G06070 65.1 2.8e-119 425.6
Chy06g00833 . 1 359 bZIP Transcription Factor Family AT1G06070 68.0 1.4e-118 423.3
Chy01g00730 . 382 526 bZIP Transcription Factor Family AT1G06070 64.6 3.2e-38 156.4
Chy03g01549 . 27 353 bZIP Transcription Factor Family AT1G45249 55.8 1.9e-83 306.6
Chy06g02175 CCT 34 349 bZIP Transcription Factor Family AT2G35530 67.8 6.6e-105 377.9
Chy04g00130 CCT 1 344 bZIP Transcription Factor Family AT2G35530 61.7 4.9e-100 361.7
Chy10g00314 . 16 325 bZIP Transcription Factor Family AT2G40620 59.3 1.5e-84 310.1
Chy11g01164 . 65 397 bZIP Transcription Factor Family AT2G40620 50.3 1.8e-69 260.0
Chy03g00519 . 170 321 bZIP Transcription Factor Family AT2G40620 65.8 1.9e-42 170.2
Chy01g00730 . 384 518 bZIP Transcription Factor Family AT2G40620 67.1 2.8e-38 156.4
Chy11g00253 CCT 1 233 bZIP Transcription Factor Family AT4G35040 62.6 3.3e-65 245.4
Chy01g00682 CCT 1 265 bZIP Transcription Factor Family AT4G35040 58.2 3.2e-60 228.8
Chy03g00855 CCT 6 334 bZIP Transcription Factor Family AT5G06950 80.7 8.7e-140 493.4
Chy10g01378 CCT 21 352 bZIP Transcription Factor Family AT5G06950 75.9 1.3e-130 463.0
Chy04g01664 . 136 468 bZIP Transcription Factor Family AT5G06950 73.0 8.2e-122 433.7
Chy03g00328 . 392 724 bZIP Transcription Factor Family AT5G06950 69.9 7.1e-118 420.6
Chy04g01760 . 146 440 bZIP Transcription Factor Family AT5G06950 60.6 3.9e-92 335.1
Chy07g01307 . 78 360 bZIP Transcription Factor Family AT5G06950 54.7 1.2e-75 280.4
Chy03g00061 . 107 412 bZIP Transcription Factor Family AT5G06950 50.6 1.6e-72 270.0
Chy11g00902 . 384 625 bZIP Transcription Factor Family AT5G06950 54.8 2.0e-67 253.1
Chy03g00855 CCT 46 333 bZIP Transcription Factor Family AT1G08320 63.2 4.0e-98 355.1
Chy04g01760 . 123 440 bZIP Transcription Factor Family AT1G08320 58.8 8.3e-96 347.4
Chy04g01664 . 177 467 bZIP Transcription Factor Family AT1G08320 60.8 5.0e-93 338.2
Chy10g01378 CCT 64 351 bZIP Transcription Factor Family AT1G08320 60.4 1.2e-91 333.6
Chy03g00328 . 430 723 bZIP Transcription Factor Family AT1G08320 58.2 6.8e-90 327.8
Chy11g00902 . 382 623 bZIP Transcription Factor Family AT1G08320 64.5 2.0e-81 299.7
Chy11g00253 CCT 1 260 bZIP Transcription Factor Family AT2G16770 59.0 1.5e-64 243.0
Chy01g00682 CCT 1 265 bZIP Transcription Factor Family AT2G16770 57.5 2.5e-62 235.7
Chy03g00855 CCT 25 334 bZIP Transcription Factor Family AT5G06960 81.0 1.3e-129 459.5
Chy10g01378 CCT 52 352 bZIP Transcription Factor Family AT5G06960 77.1 9.4e-120 426.8
Chy04g01664 . 157 468 bZIP Transcription Factor Family AT5G06960 70.9 2.3e-110 395.6
Chy03g00328 . 418 724 bZIP Transcription Factor Family AT5G06960 68.4 2.0e-106 382.5
Chy04g01760 . 132 440 bZIP Transcription Factor Family AT5G06960 59.9 2.0e-90 329.3
Chy07g01307 . 53 360 bZIP Transcription Factor Family AT5G06960 51.9 7.8e-74 274.2
Chy11g00902 . 384 625 bZIP Transcription Factor Family AT5G06960 54.8 4.9e-68 255.0
Chy01g00730 . 1 566 bZIP Transcription Factor Family AT4G38900 56.5 5.8e-133 471.5
Chy03g00519 . 115 306 bZIP Transcription Factor Family AT4G38900 54.4 1.4e-38 157.9
Chy01g01284 . 101 282 bZIP Transcription Factor Family AT4G38900 55.4 2.7e-37 153.7
Chy10g00314 . 123 237 bZIP Transcription Factor Family AT4G38900 76.5 7.8e-37 152.1
Chy01g01284 . 101 282 bZIP Transcription Factor Family AT2G21230 56.8 5.2e-38 156.0
Chy01g00455 CCT,ECH 1 263 bZIP Transcription Factor Family AT2G42380 58.2 5.5e-68 254.6
Chy03g00502 . 67 259 bZIP Transcription Factor Family AT1G03970 56.2 3.8e-40 162.2
Chy03g00855 CCT 6 334 bZIP Transcription Factor Family AT3G12250 80.9 1.5e-139 492.7
Chy10g01378 CCT 21 352 bZIP Transcription Factor Family AT3G12250 75.6 1.4e-129 459.5
Chy04g01664 . 136 468 bZIP Transcription Factor Family AT3G12250 73.4 1.1e-121 433.3
Chy03g00328 . 392 724 bZIP Transcription Factor Family AT3G12250 69.1 2.3e-116 415.6
Chy04g01760 . 146 440 bZIP Transcription Factor Family AT3G12250 59.9 4.4e-91 331.6
Chy07g01307 . 47 360 bZIP Transcription Factor Family AT3G12250 52.1 5.2e-76 281.6
Chy11g00902 . 384 625 bZIP Transcription Factor Family AT3G12250 56.0 1.0e-68 257.3
Chy03g00328 . 272 724 bZIP Transcription Factor Family AT1G68640 62.6 1.4e-143 506.5
Chy03g00855 CCT 6 334 bZIP Transcription Factor Family AT1G68640 67.5 1.2e-115 413.7
Chy04g01664 . 134 468 bZIP Transcription Factor Family AT1G68640 66.0 1.0e-111 400.6
Chy10g01378 CCT 18 352 bZIP Transcription Factor Family AT1G68640 64.2 1.7e-109 393.3
Chy04g01760 . 134 440 bZIP Transcription Factor Family AT1G68640 55.3 4.0e-87 318.9
Chy03g00519 . 31 345 bZIP Transcription Factor Family AT1G43700 53.8 9.2e-68 254.2
Chy01g01284 . 12 293 bZIP Transcription Factor Family AT1G43700 52.1 2.8e-64 242.7
Chy06g00123 . 11 421 bZIP Transcription Factor Family AT2G46270 50.1 1.1e-79 293.9
Chy06g00824 . 42 383 bZIP Transcription Factor Family AT2G31370 66.0 1.2e-106 383.6
Chy06g00833 . 45 360 bZIP Transcription Factor Family AT2G31370 67.0 1.0e-102 370.5
Chy10g00314 . 25 248 bZIP Transcription Factor Family AT2G31370 52.2 3.2e-48 189.5
Chy01g00455 CCT,ECH 1 263 bZIP Transcription Factor Family AT3G58120 52.4 2.0e-63 239.6
Chy06g02175 CCT 27 351 bZIP Transcription Factor Family AT1G32150 65.5 1.4e-99 360.1
Chy04g00130 CCT 1 345 bZIP Transcription Factor Family AT1G32150 60.2 9.1e-96 347.4
Chy06g00824 . 10 379 bZIP Transcription Factor Family AT1G06070 65.1 2.8e-119 425.6
Chy06g00833 . 1 359 bZIP Transcription Factor Family AT1G06070 68.0 1.4e-118 423.3
Chy01g00730 . 382 526 bZIP Transcription Factor Family AT1G06070 64.6 3.2e-38 156.4
Chy03g01222 . 88 323 bZIP Transcription Factor Family AT5G24800 50.6 2.3e-45 179.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001960 2 2 1 0 1 2 3 2 2 2 2 2 3 2 2 4 2 3 3 2 3 2 1 2 2 2 2 5 4 1 66
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17325 PF00170 bZIP_1 6.00E-08 CL0018 Chy TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy01g01284 Chy_Chr01 FPKM 4.900383 6.153964 8.006365 7.820373 4.805065 4.470138 5.067815 3.41707 2.898622 3.600793