Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g01288 ATGGTTCGAAAGAAGCCCACCGCAAGGGATGATGACAGCGCCCCTGCTGCAGCCCATGGTGGTGGGAAGTCGAAGAAAAAGACATTTGCAGTAGACGACGATGAGTACTCCATTGGAACCGAGTTGTCTGAAGAAGCGCAAATTCAGGAGGAGAAGGTTGTGATAACTGGGAAGAAGAAGGGTAAGAAGGGAAATTCGAAAGCTTCACAACTTAAAGACGATGATGACGAAGACGATGTGGATGGTGTTTCAGAAATTGTTATTACTGGGAAGAAGAAGGGCAAGTCGAAGAAGGGTGGAAGTAGCAGTGCTTTTTCTTCTTCCAGTTTTGGTTTGCTTGAAGAGGAGGGAATAGATGATGCTGATGATGACGAAGAATCTGTGTTGACTACAGAAAAGGATGATGATGAAGAGGAACATTCTGCAATCAAATTTTCGGGCAAGAAGAAGTCTTCCACGTCTTCGAAGAAGAGTGGTTTTTCTGCAGTTTCAGCATTCACTGCCCTTGATGATGACAATGCGATTGATAATGAGATCAGGGCTGATGAAGATATTGATGGTGAGCCTGTCATTGAATTTACAGGTAAGAAGAAGTCATCAAAAGGTGGCAAGAAGGCTGGAAGTGCATTTTCAGGTTTCAGTGGTCTTGACTATGAGGAGGAGGACAGAGATGATAAAAAAGATGAGGAGGATGTTACATCAATTAGCTTCTCTGGTAAGAAAAAAAAGTCCGCTAAGGCTTCAAAGAAGAGTGGAAATTCGTTTAGTGCAGCATTAGCAGATGAGGAAAACGATGGTGATGTTTCTATGTCAGAGACAAATAAATTAGACCATGATGGCGTTAATGAAGACGATGTTAATGTAATTGCGTTTTCTGGTAAGAAAAAGTCCTCTAAGAAGAAAAGCAACAGTACTTTTACTGCATTAAGTGATGAAAATGCGCAGGCAAATGAAGTTAAAGATGTAGTCGTGCCTGAAATACATAATACAGTAAGTAGCAATCTTGATTCTGATTTATCTAATGCCAACAAGACGGAAGCAGTGGCAGAAACTTCAAAAAATAAAAAGAAAAAGAAGAAGAGCGGAAGGACTGCTCAAGAAGAAGATGATTTGGATAAGATTCTTGCTGAGCTAGGAGAAGGGCCTGCCATTTCAAAACCAGCAGATCCTCCTCCTTTTTTCCAGGAGGCCAAAGTTGAAAATCCACCTGAGCTTGTAGCTCCTCCTGAAAAGGAAGCTGAAGAAGAAAGCACAGAATCAGCTGCAGCAAGGAAGAAAAAAAAGAAGAAGGAGAAGGGAAAAGAAAAAAAGGCGGCAGCTGCTGCAGCTGCTGCTGAAGGGAATGATGAAAAAGTTGAGGAGGTAAAGTCTGAAATCATAGAACCCAAAAAAGGTGCTGCGAAGAGTAAAGTGCCAGAGAAGAAAGTGCCAAAGCATGTTAGGGAGATGCAGGAAGCAATGGCTAGAAGAAAAGAAGAGGAAGAGCGAAGGAAAAGGGAGGAAGAAGAGAGATTGAAAAAAGAAGAAGAGGAGAGACTTAGGCTAGAAGAACTTGAAAGGCAAGCTGAAGAGGCTAAGCGTAGGAAAAAGGAAAGAGAAAAAGAGAAGCTTTTAAGGAAGAAACTGGAAGGCAAGCTGTTAACAGGTAAACAAAAGGAAGAACAGCGGAGGTTGGAAGCAATGAGGAACCAGATATTGTCAAATGCAGGAGGTTTACCTCTGTCTACTTCTGATCCCAGTGCACCAGCTAAACGACCAAAATACCAGACAAAGAAGACAAAACCATCCCATCATCAAACAAATGGCAATGCACAAACTAAGGTAGTAGAACATATAGAAGAAAAAATACAAGAAAAAGATGTGGCAGAGACAGAAGTATTGGAGTCAGAGAAGATTGAAGCTGTTGAGTTGATGCATGTGGAGGAAAAGTCAGGGGTTCTTGAGGCTACTGAAGATAATGAAATTCAAGAAGACGAGGATGAGGATGAATGGGATGCAAAGAGTTGGGATGATGCTGTTGTTGATCTTTCCTTAAAAAGTTCCTTCGCTGACGAGGAGCTTGAATCCGAACCTGAGAATGACATGAAAAAGGATAGAAAGAATGGCGCAGGTGCCAAGCTAGCTTCTCCTTCTCAAAAAGGTTTACCTTCTCAGTCTATAAAGTCTCAAGATATTGAAAACAAAAAGAAGCAGGACGAAGTTGAGGTTGCTGACAAGGGCAAAAGGAAAGAGGATGCTGTTAGAAAAAAAGCTTCAATTCCAGATGCTACTCCTGTACAACAGGAAGAAAATCTTCGCTCACCCATCTGTTGTATTATGGGTCATGTTGATACTGGTAAAACTAAGCTACTAGATTGTATCCGTGGCACAAATGTTCAAGAGGGAGAAGCGGGAGGAATTACTCAGCAGATTGGGGCAACCTATTTTCCTGCTGAGAACATTCGGGAAAGAACTAGGGAACTGAAAGCTGATGCAAAGCTGAAGGTTCCTGGCCTACTTATTATTGATACGCCTGGGCACGAGTCGTTTACGAACTTACGTTCTCGTGGTTCAGGCTTATGTGATCTTGCAATTTTGGTTGTTGACATCATGCATGGCTTAGAGCCACAAACAATAGAATCTCTTAATCTCTTGAGGATGAGAAACACAGAATTTATTGTTGCTTTGAATAAGGTTGACAGACTTTATGGGTGGAAAACAATCCGCAATGCACCAATACTCAAGACAATGAAGCAGCAAACTAAGGATGTGCAGAATGAGTTCAATATGAGGCTTATTCAGATTATTACTCAATTTAAAGAGCAGGGATTGAATACCGAACTGTATTATAAAAATAAAGAAATGGGGGAAACTTTCAGTATAGTACCTACAAGTGCTGTCACTGGTGAAGGTATTCCAGATATGTTACTATTATTGGTGCAGTGGGCCCAGAAAACTATGACGAAGAAACTTACATATAGTGATGAAGTGCAGTGCACGGTCTTGGAGGTCAAAGTTGTTGAAGGTCATGGAACAACTATTGATGTCATACTGGTTAATGGTGTGCTGCATGAAGGAGATCAAATTGTTGTTTGTGGGATGCAGGGCCCAATTGTTACTACTATTCGAGCCCTATTGACGCCCCATCCAATGAAGGAACTTCGGGTGAAGGGAACATATCTGCATCACAAGGAAATCAAGGCTGCTCAAGGGATAAAAATAACTGGACAGGGTCTTGAGCATGCCATTGCTGGAACCAGTCTTCATGTGGTAGGTCCTGAGGATGACTTGGAAGACATCAAGGATTCAGCTATGGAAGATATGAAGTCGGTTTTGAGCAGGATAGACAAGACTGGTGAGGGAGTCTGTGTTCAAGCATCTACACTTGGCTCCTTGGAAGCATTATTGGAGTTTTTGAAGTCCCCGGCAGTGAGCATTCCTGTCAGTGGAATAAGTATAGGACCAGTGCACAAAAAAGATGTCATGAAAGCTAGTGTAATGCTTGAAAAGAAAAAAGAATATGCCACTATTTTGGCTTTTGATGTTAAAGTAACTCCGGAAGCTCGAGAACTTGCCGATGAGCTTGGTGTGAAGATCTTTATTGCTGATATCATTTATCACTTGTTCGACCAATTCAAGGCCTATATTGATAATCTCAAGGAGGAAAAGAAGAAAGAAGCCGCTGAGGAAGCAGTCTTTCCTTGTGTTCTCAAAATTTTACCAAATTGCATTTTCAACAAAAAGGATCCAATTGTGTTGGGGGTCGATGTGATTGAAGGCATTGCCAAGGTTGGCACACCAATTTGTATTCCTCAAAGAGAATTTATTGACATTGGTCGTATTGCATCTATTGAAAATAATCACAAACCTGTTGATTATGCAAAGAAAGGGCAGAAGATTGCGATTAAGATAGTTGGGCATTCCTCGGAGGAGCAGCAAAAGATGTATGGTAGGCATTTTGATTTGGAGGATGAACTTGTGAGCCATATATCAAGGAAGTCCATTGACCTTCTCAAAGCCAATTATCGGCTGGTTCGGATCCGGTGTCGTTGGGTTAATGTGTTGAAGATACAGAGGAAACGTGGGATGGAAGAGAAGGTTGTCCCTTTGGAAAAGACACCCGTGCCGAGTTTATGGATAGGGTGA 4125 41.77 MVRKKPTARDDDSAPAAAHGGGKSKKKTFAVDDDEYSIGTELSEEAQIQEEKVVITGKKKGKKGNSKASQLKDDDDEDDVDGVSEIVITGKKKGKSKKGGSSSAFSSSSFGLLEEEGIDDADDDEESVLTTEKDDDEEEHSAIKFSGKKKSSTSSKKSGFSAVSAFTALDDDNAIDNEIRADEDIDGEPVIEFTGKKKSSKGGKKAGSAFSGFSGLDYEEEDRDDKKDEEDVTSISFSGKKKKSAKASKKSGNSFSAALADEENDGDVSMSETNKLDHDGVNEDDVNVIAFSGKKKSSKKKSNSTFTALSDENAQANEVKDVVVPEIHNTVSSNLDSDLSNANKTEAVAETSKNKKKKKKSGRTAQEEDDLDKILAELGEGPAISKPADPPPFFQEAKVENPPELVAPPEKEAEEESTESAAARKKKKKKEKGKEKKAAAAAAAAEGNDEKVEEVKSEIIEPKKGAAKSKVPEKKVPKHVREMQEAMARRKEEEERRKREEEERLKKEEEERLRLEELERQAEEAKRRKKEREKEKLLRKKLEGKLLTGKQKEEQRRLEAMRNQILSNAGGLPLSTSDPSAPAKRPKYQTKKTKPSHHQTNGNAQTKVVEHIEEKIQEKDVAETEVLESEKIEAVELMHVEEKSGVLEATEDNEIQEDEDEDEWDAKSWDDAVVDLSLKSSFADEELESEPENDMKKDRKNGAGAKLASPSQKGLPSQSIKSQDIENKKKQDEVEVADKGKRKEDAVRKKASIPDATPVQQEENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKADAKLKVPGLLIIDTPGHESFTNLRSRGSGLCDLAILVVDIMHGLEPQTIESLNLLRMRNTEFIVALNKVDRLYGWKTIRNAPILKTMKQQTKDVQNEFNMRLIQIITQFKEQGLNTELYYKNKEMGETFSIVPTSAVTGEGIPDMLLLLVQWAQKTMTKKLTYSDEVQCTVLEVKVVEGHGTTIDVILVNGVLHEGDQIVVCGMQGPIVTTIRALLTPHPMKELRVKGTYLHHKEIKAAQGIKITGQGLEHAIAGTSLHVVGPEDDLEDIKDSAMEDMKSVLSRIDKTGEGVCVQASTLGSLEALLEFLKSPAVSIPVSGISIGPVHKKDVMKASVMLEKKKEYATILAFDVKVTPEARELADELGVKIFIADIIYHLFDQFKAYIDNLKEEKKKEAAEEAVFPCVLKILPNCIFNKKDPIVLGVDVIEGIAKVGTPICIPQREFIDIGRIASIENNHKPVDYAKKGQKIAIKIVGHSSEEQQKMYGRHFDLEDELVSHISRKSIDLLKANYRLVRIRCRWVNVLKIQRKRGMEEKVVPLEKTPVPSLWIG* 1375
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 16286031 16300045 - Chy1G012880.1 Chy01g01288 218469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g01288 1374 MobiDBLite consensus disorder prediction 115 133 - -
Chy01g01288 1374 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 765 981 IPR000795 GO:0003924|GO:0005525
Chy01g01288 1374 Coils Coil 476 540 - -
Chy01g01288 1374 SUPERFAMILY Translation proteins 1224 1336 IPR009000 -
Chy01g01288 1374 MobiDBLite consensus disorder prediction 447 560 - -
Chy01g01288 1374 SUPERFAMILY Initiation factor IF2/eIF5b, domain 3 1090 1219 IPR036925 -
Chy01g01288 1374 MobiDBLite consensus disorder prediction 171 606 - -
Chy01g01288 1374 Pfam Elongation factor Tu domain 2 1004 1081 IPR004161 GO:0005525
Chy01g01288 1374 MobiDBLite consensus disorder prediction 327 348 - -
Chy01g01288 1374 MobiDBLite consensus disorder prediction 1 159 - -
Chy01g01288 1374 MobiDBLite consensus disorder prediction 405 424 - -
Chy01g01288 1374 MobiDBLite consensus disorder prediction 268 284 - -
Chy01g01288 1374 Gene3D Translation factors 1220 1353 - -
Chy01g01288 1374 MobiDBLite consensus disorder prediction 723 751 - -
Chy01g01288 1374 MobiDBLite consensus disorder prediction 681 703 - -
Chy01g01288 1374 Gene3D - 759 987 IPR027417 -
Chy01g01288 1374 Pfam Elongation factor Tu GTP binding domain 769 977 IPR000795 GO:0003924|GO:0005525
Chy01g01288 1374 PRINTS GTP-binding elongation factor signature 833 843 IPR000795 GO:0003924|GO:0005525
Chy01g01288 1374 PRINTS GTP-binding elongation factor signature 885 894 IPR000795 GO:0003924|GO:0005525
Chy01g01288 1374 PRINTS GTP-binding elongation factor signature 849 860 IPR000795 GO:0003924|GO:0005525
Chy01g01288 1374 PRINTS GTP-binding elongation factor signature 769 782 IPR000795 GO:0003924|GO:0005525
Chy01g01288 1374 Pfam Translation-initiation factor 2 1094 1206 IPR023115 -
Chy01g01288 1374 Gene3D Translation factors 988 1106 - -
Chy01g01288 1374 MobiDBLite consensus disorder prediction 184 199 - -
Chy01g01288 1374 MobiDBLite consensus disorder prediction 642 760 - -
Chy01g01288 1374 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 1 1336 IPR015760 -
Chy01g01288 1374 MobiDBLite consensus disorder prediction 651 668 - -
Chy01g01288 1374 CDD IF2_eIF5B 768 978 - -
Chy01g01288 1374 Coils Coil 1202 1222 - -
Chy01g01288 1374 MobiDBLite consensus disorder prediction 361 376 - -
Chy01g01288 1374 TIGRFAM small_GTP: small GTP-binding protein domain 770 896 IPR005225 GO:0005525
Chy01g01288 1374 CDD aeIF5B_II 989 1099 - -
Chy01g01288 1374 CDD IF2_aeIF5B_IV 1228 1323 - -
Chy01g01288 1374 Gene3D - 1107 1213 IPR036925 -
Chy01g01288 1374 PANTHER PHOTOSYSTEM II PROTEIN D1 1 1336 - -
Chy01g01288 1374 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 765 1056 IPR027417 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g01288 Chy-Chr1:16286031 Chy07g00571 Chy-Chr7:4996595 2.52E-29 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g01288 K03243 - csv:101204360 1512.66