Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g01310 ATGACGCTTTACGAAGTGAATCCAGGGGAGACTTGCAAAGGTTTGGAAGGTGAGGATCTGTATGAGGAACTGTGGAAGGCATGTGCAGGACCTCTTGTTGAAGTTCCTGTCGATGGAGAAAGGGTTTTTTACTTCCCTCAGGGTCATATGGAACAATTGGAAGAGTCCACAAATCAGGAGCTTAATCACCAAATCCCTCATTTTGATCTCCCTCCCAAGATCCTATGTCGTGTTGTTAACATTCGTTTGCTGGCTGAAAAGGAAACGGATGAAGTCTATGCTCAAATCACTTTATACCCAGAGGCTGATCAAAGTGAGCCCCAAAGCGCTGATCCAGAGCCACCTGAACGTACAAGGCAAACTGTTCATTCTTTTTGTAAGATTTTGACTGCTTCTGATACTAGCACTCATGGAGGTTTCTCAGTTCTTAGAAAGCATGCCACTGAATGTCTTCCTCCCCTTGATATGAGCCAATCCACCCCAACTCAGGAGTTAGCTGCCAAGGATCTTCATGGTTATGAGTGGAAATTTAAGCATATTTTCAGAGGTCAACCGCGGAGGCATTTGCTAACTACGGGGTGGAGTACATTTGTTACATCAAAACGGCTGGTTGCTGGGGATGCTTTTGTTTTCTTAAGGGGTGACAATGGAGAACTGAGGGTTGGCGTTCGGCGGCAGGCTCGGCAGCAGAGCTTGATGCCTTCCTCTGTGATATCTAGCCATAGCATGCATCTTGGAGTTCTTGCCACTGCTTCTCATGCTGTTCGTACCCAGACCTATTTCGTTGTGTATTACAAACCGAGAACTAGCCAATTCATCATCAGCTTAAACAAATACTTGGAGACTGTTAAAAATGGTTATGAAGTGGGGATGCGCTTCAAGATGAGATTTGAAGGAGAAGAATCACCAGAGAGAAGGTTCACTGGAACTATTGTTGGTGTTGGTGATATGTCTCCGCAATGGTTGGATTCGAAATGGCGATCTCTAAAGATTCAATGGGATGAACCTGCTACGATTCAAAGGCCCGAGCGAGTTTCTCCATGGGAGATTGAACCCTTTGTACCTTCTGCCTCCTTAAACTTCACTCATCCTGCTATAAAGAGTAAAAGGGCCCGTCCTGTTGAGATTCCTCCTCCTGAAATTACTTCTGGTTCAGCTCCTTCAGGATTTTGGCTCCAAGGATCGACGATTTCTCACGAAATATCCCAACTAAGTGGTACGAATGAAGTTCAAACCAGCAACAACCGGGTTGTCTGGACTCTCGGACAGCGAAAACTTGATAGCAATAGCAGCCATTGTAATCCAGTAGCAAATGTTGAAGGCATTTGGCCTTCTCCTCCACTCAATATTTCCTTGAACGTTTACCCAGATTCAACATTTGAAAGAGAACTTGTTCAACAAAAACATCCACTATCCTCTCCTTATTCTTCATCTGTCACTTCAAAGCCTAGTAGTGACCTCATACAGCCCGATCAATTGGAGAAAGGGGGTAAACCCGACATTTCTCTTGGTTGCCGAATATTTGGAATTGATTTGAAAAATAACTGTAGCATTGTCCCTACCTTGGAAAGAAGATCGTCTTGCCTAATGATGGTGACCAATGGTGCCAAAGAACCTGTAGTTACAGCTGTTGTGACACCTCAAGTCGATGTGGGAAACCTCTCACAGCCTTCAAAGGAGCAGCAACTCTCATCAGAGTTGTTGACAAAGGGAACACAAACAAAACACATCTCCAATCTATCGTCAAGAACACGTACAAAGGTACAAATGCAAGGAGTTGCAGTAGGTCGAGCGGTAGACTTGACAACACTTGAAGGGTACGAAGATCTGATAGACGAGCTTGAAAATGTGTTTGAAATAAAAGGAGAACTTCGTGGAATAAACAAATGGTCTATCGTTTTCACAGACGACGAAAACGATATGATGCTCGTGGGGGACGATCCATGGCCAGAGTTTTGTAAGATGGTGAAGAGGATCTTTATATGTTCAAGTGAAGAAGTAAAGAAGATGAGTAGGGAGAGCAAGATTGTTTCTCCATCATCCTTAGATAGCCTGGATTCAGAGCGAAAGACTGAATCCTAA 2082 44.14 MTLYEVNPGETCKGLEGEDLYEELWKACAGPLVEVPVDGERVFYFPQGHMEQLEESTNQELNHQIPHFDLPPKILCRVVNIRLLAEKETDEVYAQITLYPEADQSEPQSADPEPPERTRQTVHSFCKILTASDTSTHGGFSVLRKHATECLPPLDMSQSTPTQELAAKDLHGYEWKFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDAFVFLRGDNGELRVGVRRQARQQSLMPSSVISSHSMHLGVLATASHAVRTQTYFVVYYKPRTSQFIISLNKYLETVKNGYEVGMRFKMRFEGEESPERRFTGTIVGVGDMSPQWLDSKWRSLKIQWDEPATIQRPERVSPWEIEPFVPSASLNFTHPAIKSKRARPVEIPPPEITSGSAPSGFWLQGSTISHEISQLSGTNEVQTSNNRVVWTLGQRKLDSNSSHCNPVANVEGIWPSPPLNISLNVYPDSTFERELVQQKHPLSSPYSSSVTSKPSSDLIQPDQLEKGGKPDISLGCRIFGIDLKNNCSIVPTLERRSSCLMMVTNGAKEPVVTAVVTPQVDVGNLSQPSKEQQLSSELLTKGTQTKHISNLSSRTRTKVQMQGVAVGRAVDLTTLEGYEDLIDELENVFEIKGELRGINKWSIVFTDDENDMMLVGDDPWPEFCKMVKRIFICSSEEVKKMSRESKIVSPSSLDSLDSERKTES* 694
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 16826589 16830039 - Chy1G013100.1 Chy01g01310 218491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g01310 693 Pfam B3 DNA binding domain 125 226 IPR003340 GO:0003677
Chy01g01310 693 SUPERFAMILY CAD & PB1 domains 578 659 - -
Chy01g01310 693 Pfam AUX/IAA family 629 667 IPR033389 -
Chy01g01310 693 Pfam AUX/IAA family 574 619 IPR033389 -
Chy01g01310 693 MobiDBLite consensus disorder prediction 471 495 - -
Chy01g01310 693 CDD B3_DNA 123 225 IPR003340 GO:0003677
Chy01g01310 693 ProSiteProfiles B3 DNA-binding domain profile. 125 227 IPR003340 GO:0003677
Chy01g01310 693 MobiDBLite consensus disorder prediction 471 488 - -
Chy01g01310 693 Gene3D - 122 227 IPR015300 -
Chy01g01310 693 MobiDBLite consensus disorder prediction 99 120 - -
Chy01g01310 693 MobiDBLite consensus disorder prediction 669 693 - -
Chy01g01310 693 Gene3D - 579 671 - -
Chy01g01310 693 PANTHER AUXIN RESPONSE FACTOR 11 10 681 - -
Chy01g01310 693 SUPERFAMILY DNA-binding pseudobarrel domain 116 254 IPR015300 -
Chy01g01310 693 ProSiteProfiles PB1 domain profile. 583 675 IPR000270 GO:0005515
Chy01g01310 693 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 10 681 IPR044835 GO:0003677|GO:0006355|GO:0009725
Chy01g01310 693 SMART B3_2 125 227 IPR003340 GO:0003677
Chy01g01310 693 Pfam Auxin response factor 251 330 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Chy01g01310 693 Gene3D - 287 358 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g01310 Chy-Chr1:16826589 Chy07g01133 Chy-Chr7:16265895 0 dispersed
Chy01g01310 Chy-Chr1:16826589 Chy11g01328 Chy-Chr11:19476458 1.48E-22 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17327 PF02362 B3 2.10E-21 CL0405 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g01310 K14486 - csv:101205805 1361.28