Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g01396 ATGGAAAACACTAAGCTTTCGTTAGCACTCTTTGCCACTTTACTTCTCACAAATGCTATTATTGTTAGACCAAATTCTAATGAAAATGGTGTCATGAATAATATTCTGAGTGTTATAGAAACGTCATGTGCCATTACTCTTTATCCTCAACTGTGTCACTCAACAATATCCTCCATCGTTGGTACATCTAATTTGTTGAGTTTGAAAGATATCGTTGAACTGTCATTGAGTGTTGCTATGGATGCAGCTAAGCTTAACAATGAAAACATAAAAAAACTTTCGATGTCTGGTAACAACGTTGGTAAACGAGACAGGATCGCTCTTCATGATTGTGTCAAAACAACCGACAGGACAATTTATGAGCTTGACAAGGCTATAGAGGATTTTTGTGAGTATCCAAACAAGAAATCTCTTGCTTCGTATGCCGATGACCTCAAAACTTTTCTCAGTTCTGCCATTACTAATCAGGTGACTTGTTTGGATGGATTATCCCATGACAAAACAGAGAAAAGGGTTTTGAGACTTATTGAGAACACACATAATCAAGTGACGAAGTTGTGTAGTAATGCATTGGCTTTGGTTAAAAAATTGACAACAGACATTGCCTTAACAGATGAGAAAAGCTTGGTGGTCCATGACTTCCCTTATAAGATAACTTCAATATCCTCCCAAATAGATGACCCCAAAATTGTACTCTTTTCCAATCAGAAATTTGGATATAATGAACTGGAGGAAGGTGAGAGTAGAAGAAGGGAGGATTTGGAAAATGGAATAAAGTGGCCAGAATGGATGTCAATCCAAGACCAGATGCTTTTAGACTCATCGTCAGAAGAGGCGGCGGATGTGGTGGTGGCGGCGGATGGAACCGGAAATTATAAAACGGTGGCGGAGGCAGTGAAGGCGGCGCCGAGTAAAAACAGCAGATATATAATAAAAATAAAGGCTGGAGTTTACAGGGAAAATGTTGATGTACCAAGTAGTAAACGGAATATTATGTTTTGGGGAGATGGAAGATCCAACACCATTATCACTGCTGATAGAAGTCATGGGAGTGGCTGGTCAACCTTCAATTCCGCCACAGTCGTTGCTGTGGGGGACGGATTCTTAGCTCGAGACATAACCTTTCAAAACACAGCCGGAGCAGCCAACGGCCAAGCTGTAGCCCTCCGTGTTGGCTCAGATCACTCAGCCTTCTACCGATGTAGCATGCTTGCCTATCAAGACACTCTCTACGTCCACTCAAATCGTCAATTCTTCGTCAACTGCGTTGTAGCAGGAACAGTCGACTTCATCTTTGGAAACGCAGCAGCAGTAATCCAAAACTCCGATCTCACCCCTCGCAAACCAGGCCCTAACCAAAAGAACATGGTGACGGCACAATCAAGAACCGACATTAATCAAAACACGGGAATCGTGATCCAAAAGTGTAGGATAAAAGCGACGTCAGGCTTGGAGCCTGTGATAAAAGAATTCCCAAGCTTCCTTGGGAGACCATGGGAGGAATATGCTAGGGTTGTGGTAATGCAAACGTCAATAACCAATGTGATAGACAAAGAGGGGTGGTCGACATGGAATGGTGACATAAAGGAACCCTACTTTGCAGAATATGACAACAATGGAGCTGGTGCTGATACTTCTGGTAGAGTGTCATGGTCTCTTGTTATTAATGAAGCTGAAGCTAAGACCTTCACGGCTGAACCATTCATTGACGGTTCGAGTTGGCTTCCATCTACTGGCTTTCCTTATCAGCTTGGTCTCTATAACTGA 1767 42.56 MENTKLSLALFATLLLTNAIIVRPNSNENGVMNNILSVIETSCAITLYPQLCHSTISSIVGTSNLLSLKDIVELSLSVAMDAAKLNNENIKKLSMSGNNVGKRDRIALHDCVKTTDRTIYELDKAIEDFCEYPNKKSLASYADDLKTFLSSAITNQVTCLDGLSHDKTEKRVLRLIENTHNQVTKLCSNALALVKKLTTDIALTDEKSLVVHDFPYKITSISSQIDDPKIVLFSNQKFGYNELEEGESRRREDLENGIKWPEWMSIQDQMLLDSSSEEAADVVVAADGTGNYKTVAEAVKAAPSKNSRYIIKIKAGVYRENVDVPSSKRNIMFWGDGRSNTIITADRSHGSGWSTFNSATVVAVGDGFLARDITFQNTAGAANGQAVALRVGSDHSAFYRCSMLAYQDTLYVHSNRQFFVNCVVAGTVDFIFGNAAAVIQNSDLTPRKPGPNQKNMVTAQSRTDINQNTGIVIQKCRIKATSGLEPVIKEFPSFLGRPWEEYARVVVMQTSITNVIDKEGWSTWNGDIKEPYFAEYDNNGAGADTSGRVSWSLVINEAEAKTFTAEPFIDGSSWLPSTGFPYQLGLYN* 589
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 18951154 18962381 - Chy1G013960.1 Chy01g01396 218577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g01396 588 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 38 198 IPR035513 -
Chy01g01396 588 Pfam Pectinesterase 281 571 IPR000070 GO:0030599|GO:0042545
Chy01g01396 588 TIGRFAM PME_inhib: pectinesterase inhibitor domain 9 198 IPR006501 GO:0004857
Chy01g01396 588 PANTHER PECTINESTERASE 16 585 - -
Chy01g01396 588 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 3 16 585 - -
Chy01g01396 588 Gene3D Invertase/pectin methylesterase inhibitor family protein 36 199 IPR035513 -
Chy01g01396 588 SUPERFAMILY Pectin lyase-like 278 585 IPR011050 -
Chy01g01396 588 Pfam Plant invertase/pectin methylesterase inhibitor 38 193 IPR006501 GO:0004857
Chy01g01396 588 Gene3D - 275 586 IPR012334 -
Chy01g01396 588 CDD PMEI-like_3 41 199 - -
Chy01g01396 588 SMART PMEI_2 34 193 IPR006501 GO:0004857
Chy01g01396 588 ProSitePatterns Pectinesterase signature 2. 424 433 IPR033131 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g01396 Chy-Chr1:18951154 Chy04g00723 Chy-Chr4:8881204 0 dispersed
Chy01g01396 Chy-Chr1:18951154 Chy01g01398 Chy-Chr1:18997971 0 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g01396 K01051 - csv:101221055 1098.57