Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g01398 ATGGAAAACAATAAACTTTCACTCGCTCTCTTAGCTATTTTACTCCTAACAAATGCTATTGTTGTTAGAGTTAATTCTAATGAAAATAGTGTCATAGAAACCTCATGTGCCATTACTCTTTATCCTCAACTCTGTCATTCAACAATATCCTCCATCGTTGGAACGTCTAATTTGTTGAGTTTGAAAGATATTTTTGAAGTGTCGTTGAGTGTTGCTATGGATGCAGCTAAGCATAACAAAAAAAACATAAAAAAACTTATGATGTCCATTAACGATGTTAGTAAACGAGACAAGATTGGTCTTCATGATTGTGTTGAAACAACTGACAGGACCATTTATGAGCTTGGCAAAGCTATAGAGGTCTTTCGTGAGTATCCGAACAAGAGATCTCTTACTTTGTACGCCGATGACCTCAAAACCTTCCTCAGTTCTGCCATTACTAATCAGGTGACTTGTTTGGATGGATTATCACATGACAAAACAGAGAAAAGGGTTTCGAGACTTATTGAGAACACACATATTCATGTGACAAAGTTGTGTAGTAATGCATTGGCTTTGGTTAAAAAATTGACAACAGACATTGCCTTAACAGATGAGAAAAGCTTGGTGGTCCATGATTTCCCTTATAAGATAACTTCAATACCCTCCCAAATGGATGGCCCCAAAATTGTACTCTTTTCCAACCAGGAGGAAGATGAGAATAGAAGAAGGGAGGACTTAGAAGATGGAATAAACTGGCCAAAATGGATGTCAATCGAAGACCAGAAGCTTTTGGAATCTTCGTCAGAAGCAGCAGCGGACGTTGTGGTGGCGGCGGATGGAAGTGGAAATTATAAAACGGTGGCGGAGGCGGTGGCGGCAGCTCCGAGTAAGAACAGCAAAAGATATATAATAAAAATAAAGGCTGGAGAGTACTGGGAAAATGTCGATGTACCAAGTAGTAAAAGGAATATTATGTTTTGGGGAGATGGAAGATCCAACACCAAAATCATTTCTAGTAGAAGTCATGGAACTGGCTGGTCAACCTTCAATTCCGCCACAGTTGCTGCTGTGGGGGATGGATTTTTAGCTCGAGACATAACCTTTCAAAACAAAGCCGGAGCAGCCAACGGCCAAGCTGTAGCTCTCCGTGTTGGCTCAGATCACTCAGCCTTCTACCGTTGTAGCATGCTTGCCTACCAAGACACTCTCTACGTTCACTCGAACCGTCAATTCTTCGTCAACTGCGTTGTAGCAGGCACAGTTGACTTCATCTTTGGAAATGCAGCAGCCGTATTCCAAAACTCCGACATCACCCCTTGCAAACCAGGGCCTAAACAAAGGAACATGGTCACAGCACAATCAAGAACCGACATTAATCAAAACACGGGTATCGTCATCCAAAAGTGTAGGATAAAAGCGACGTCAGACTTGGAGCCTGTGATAGAAGAATTCCCAAGCTTCCTCGGGAGACCATGGGAAGAATATGCTAGGGTTGTGGTAATGCAAACGGCAATAAGCAATGTGATAGACAAAGAGGGGTGGTCCACATGGAATGGCCAAAGAAAGTCACCATACTATGCGGAATATGATAATAATGGAGCTGGAGCAGATACTTCTGGTAGAGTGCCATGGTCTCTTGTTATTAATGAGGCTCAAGCTAAGACTTTTACGGCTGGACCATTTATTGGTGGAGCTGATTGGCTTTCATCTACTGGCTTTCCCTATCAGCTTGGTCTCTATAAATGA 1728 42.19 MENNKLSLALLAILLLTNAIVVRVNSNENSVIETSCAITLYPQLCHSTISSIVGTSNLLSLKDIFEVSLSVAMDAAKHNKKNIKKLMMSINDVSKRDKIGLHDCVETTDRTIYELGKAIEVFREYPNKRSLTLYADDLKTFLSSAITNQVTCLDGLSHDKTEKRVSRLIENTHIHVTKLCSNALALVKKLTTDIALTDEKSLVVHDFPYKITSIPSQMDGPKIVLFSNQEEDENRRREDLEDGINWPKWMSIEDQKLLESSSEAAADVVVAADGSGNYKTVAEAVAAAPSKNSKRYIIKIKAGEYWENVDVPSSKRNIMFWGDGRSNTKIISSRSHGTGWSTFNSATVAAVGDGFLARDITFQNKAGAANGQAVALRVGSDHSAFYRCSMLAYQDTLYVHSNRQFFVNCVVAGTVDFIFGNAAAVFQNSDITPCKPGPKQRNMVTAQSRTDINQNTGIVIQKCRIKATSDLEPVIEEFPSFLGRPWEEYARVVVMQTAISNVIDKEGWSTWNGQRKSPYYAEYDNNGAGADTSGRVPWSLVINEAQAKTFTAGPFIGGADWLSSTGFPYQLGLYK* 576
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 18997971 19003700 - Chy1G013980.1 Chy01g01398 218579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g01398 575 ProSitePatterns Pectinesterase signature 2. 411 420 IPR033131 -
Chy01g01398 575 CDD PMEI-like_3 34 192 - -
Chy01g01398 575 Pfam Plant invertase/pectin methylesterase inhibitor 31 186 IPR006501 GO:0004857
Chy01g01398 575 SUPERFAMILY Pectin lyase-like 262 572 IPR011050 -
Chy01g01398 575 TIGRFAM PME_inhib: pectinesterase inhibitor domain 6 191 IPR006501 GO:0004857
Chy01g01398 575 SMART PMEI_2 27 186 IPR006501 GO:0004857
Chy01g01398 575 Pfam Pectinesterase 267 558 IPR000070 GO:0030599|GO:0042545
Chy01g01398 575 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 3 22 572 - -
Chy01g01398 575 Gene3D Invertase/pectin methylesterase inhibitor family protein 26 192 IPR035513 -
Chy01g01398 575 PANTHER PECTINESTERASE 22 572 - -
Chy01g01398 575 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 30 191 IPR035513 -
Chy01g01398 575 Gene3D - 261 573 IPR012334 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g01398 Chy-Chr1:18997971 Chy04g00723 Chy-Chr4:8881204 0 dispersed
Chy01g01396 Chy-Chr1:18951154 Chy01g01398 Chy-Chr1:18997971 0 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g01398 K01051 - csv:101220821 1069.68