Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g01416 ATGGACAACCAATTCTTCCTCAATCCTACTGGAATCTCTCAATCTCTTATGCATTTTGATTCCAATCCTTCCATTGCTACCTGGCACCAACAATTTTCATCCCCCATGGATCTTCCAACTCAACTTCCTGACCTTACTCACTGTTCTTCTTCCTCTCACCAATCGCCACCGGATTGTTTTCTCAATCCGGTTTCCGATCAGAGCTTTCAATTTGATTCTGCTTTGAGTTCCATGGTTTCTTCTCCAGCGGCCTCGAATTCTAACATAACCAATGAGAGCTTCACGATCAGAGAACTGATCGGTAAATTAGGTGGAAATTCTGAGAGGAGGATCTTGGAATTGAATAATTCTACTGCCGCCGCCGCATTGGCTCCTTCTTCTTCAAGTGTGGCGGAATTTTCGTCCGATCCTGGATTTGCTGAACGAGCTGCTAGGTTTTCGTGTTTTGGAAGTAGGAGTTTCAATGGCCGCCAGTTGACGAACGAATTCGGTAATTATAGATCTCATCTCTCCATCGGTAATGAGAAATTGAGCCGAGTATCGAGTAGTCCATCGCTTAAAGCACTTGGATCTGAAATGAATTTGCAAGAACACAAGAACAATTCCTCATCGCAAGAAGACGAATCGTCTCTCTCGAATCAAGACAAAACGATTACGAATCCACGGAAGAGAAAAGCAATTACGAAGGCTAAACTCAAAGAACCGGTGGTTGAAGCTACTCCCGAAAAAGAAAGTCCGAAGAAATTGAAGACAGTGGAAAGAAAGGAAAACGTGAAAACGGAAGAGGATTTGAAAAAAAACGATGAAAATTCAGCGGAAGAGAAACAAACAAAGGCGAATTCAAAACCTCCCGAAGCTCCTAAAGATTACATTCATGTTAGAGCAAGAAGAGGCCAAGCTACAGATAGCCATAGTCTTGCTGAAAGAGTTAGAAGAGAGAAAATCAGTGAAAGAATGAAGCTTCTTCAAGATCTTGTACCAGGTTGCAACAAGGTAACTGGAAAAGCTTTGATGTTGGATGAGATAATCAACTATGTGCAGTCATTACAACACCAAGTTGAGTTTCTTTCCATGAAGTTGGCTTCTGTGAATACAACCAGGGTGGATTTCAACGTGGATTCTCTTATCTCTTCTAAACAAATGTACCAATCAGGAACAAGTTTGACACATCCTCAATTTTCCCCTATAGATTCCTCAGCTTCAAGCTTTTATGGGCACCAAAATTCCTCTCTTCCAACCACCTCTCATTGCTCTGTGGACCCTATTGACTCTGTTTTATGCCAAAATCTTCCTATTCAACTCCCTCCTCTCAATTCCTTCCTTCAAAATCCCTCTCAGTATCCAAATTTCGGAGAAGATGAACTTCAAAGCATTGTTCAAATGGGGTTCGTCCAAAATCAGACTCAAGAAATATCATTACAATCTCACAACTTCAACTTAG 1441 41.5 MDNQFFLNPTGISQSLMHFDSNPSIATWHQQFSSPMDLPTQLPDLTHCSSSSHQSPPDCFLNPVSDQSFQFDSALSSMVSSPAASNSNITNESFTIRELIGKLGGNSERRILELNNSTAAAALAPSSSSVAEFSSDPGFAERAARFSCFGSRSFNGRQLTNEFGNYRSHLSIGNEKLSRVSSSPSLKALGSEMNLQEHKNNSSSQEDESSLSNQDKTITNPRKRKAITKAKLKEPVVEATPEKESPKKLKTVERKENVKTEEDLKKNDENSAEEKQTKANSKPPEAPKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQHQVEFLSMKLASVNTTRVDFNVDSLISSKQMYQSGTSLTHPQFSPIDSSASSFYGHQNSSLPTTSHCSVDPIDSVLCQNLPIQLPPLNSFLQNPSQYPNFGEDELQSIVQMGFVQNQTQEISLQSHNFNLX 481
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 19575646 19577974 + Chy1G014160.1 Chy01g01416 218597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g01416 481 Pfam Helix-loop-helix DNA-binding domain 303 350 IPR011598 GO:0046983
Chy01g01416 481 MobiDBLite consensus disorder prediction 183 289 - -
Chy01g01416 481 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 297 364 IPR036638 GO:0046983
Chy01g01416 481 PANTHER BHLH TRANSCRIPTION FACTOR 2 106 - -
Chy01g01416 481 PANTHER BHLH TRANSCRIPTION FACTOR 123 479 - -
Chy01g01416 481 Gene3D - 296 368 IPR036638 GO:0046983
Chy01g01416 481 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 299 349 IPR011598 GO:0046983
Chy01g01416 481 CDD bHLH_AtBPE_like 289 375 - -
Chy01g01416 481 SMART finulus 305 355 IPR011598 GO:0046983
Chy01g01416 481 MobiDBLite consensus disorder prediction 183 217 - -
Chy01g01416 481 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 2 106 IPR024097 GO:0006355
Chy01g01416 481 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 123 479 IPR024097 GO:0006355
Chy01g01416 481 MobiDBLite consensus disorder prediction 230 289 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00774 Chy-Chr1:5949888 Chy01g01416 Chy-Chr1:19575646 3.88E-48 dispersed
Chy01g01416 Chy-Chr1:19575646 Chy06g00829 Chy-Chr6:5866149 8.34E-89 dispersed
Chy02g02693 Chy-Chr2:29819597 Chy01g01416 Chy-Chr1:19575646 3.79E-41 dispersed
Chy12g01438 Chy-Chr12:18379377 Chy01g01416 Chy-Chr1:19575646 1.21E-37 dispersed
Chy01g01416 Chy-Chr1:19575646 Chy07g00212 Chy-Chr7:1716195 1.80E-48 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17332 PF00010 HLH 3.60E-06 No_clan Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g01416 - - csv:101204984 908.286