Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g01423 ATGGATGAAGATTTTGATATCCCTGCCGCCCCTGACATGGCCGACGACTTGGATCTTCCTGATGAAACCGTTGCTCTCAAGGTTGGTGAGGAGAAAGAGATTGGAAATCAAGGCTTGAAAAAGAAGCTTCTTAAGGAAGGTGAAGGATGGGTTACTCCAGAAAATGGCGATGAGGTTGAAGTTCACTATACTGGAACTTTGCTTGATGGTACTCAGTTTGATTCTAGCCGCGATCGTGGAACCCCGTTCAAGTTCACTCTTGGTCAAGGACAAGTGATTAAAGGATGGGATTTGGGTATCAAAACAATGAAGAAAAATGAAAAAGCTCTTTTTACCATTCCTCCTGATCTGGCATATGGTGAATCTGGCTCCCCACCAACCATTCCTCCTAGTGCGACATTGCAGTTCGATGTTGAGTTACTATCTTGGACAAGCGTTAAGGACATATGTAAGGATGGAGGAATATTCAAGAAGATCCTAACTGAAGGGGACAAATGGGAGAATCCAAAGGACCTTGATGAAGTGCTAGTAAATTTTGAAGCTAAGCTAGAAGATGGAACACTTGTTGCAAAAGCTGATGGAGTGGAATTCACTGTTGCGGATGGTTACTTTTGCCCTTCACTTGCAAAGGCTGTAAAAACCATGAAGTTAGGTGAAAAGGCACTCCTCACGGTGAAGCCACAATATGGGTTCGGGGAGAAAGGTAAATCTGCCTGTGGCAATGAAGGTGCAGTTCCACCAAATGCATCTCTCGATATTACTTTAGAGTTGGTATCTTGGAAGACTGTTTCAGAAGTTACCCCTGACAAGAAGGTCATCAAGAAAATTCTGAAAGAAGGAGAAGGTTATGAGAAGCCAAATGATGGAGCCATCGTCAAAGTGAAATTGATAGGGAAGTTGGGAGATGGCAAGATATTTTTGAGGAAGGGCCACGATAATGGTGAAGAGCCATATGAGTTCAAAACAGACGAAGAACAAGTGATTGATGGTATCGACAAAGCTGTGGTGACTATGAAGAAAGGTGAGATAGCCCTGCTGACAATAGCACCAGAGTATGCTTTTGGTTCGTCTGAGTCACAACAGGATTTAGCTGTAGTTCCTCCAAACTCAACTGTGTATTACGAGGTTGAGCTGGTGGCTTTTGACAAGGAGAAAGAGTCATGGGATATGAATAACCAGGAAAAGATTGAAGCTGCTGGTAAAAAGAAGGAAGAAGGAAATGTGTTGTTTAAGTCTGGAAAATTTGCTAGAGCTTCCAAGAGATATGAGAAGGCTGTGAAGTTCATTGAATACGATTCTTCATTTAGCGAAGAAGAGAAAAAGCAGGCGAAGGCATTGAAAGTTGCATGCAATTTGAACAATGCAGCGTGTAAATTGAAGCTAAAGCTGTACAACGAGGCAGAGAAATTGTGCACTAAGGTACTGGAACTTGAGAGTTCGAATGTCAAGGCTCTCTATAGAAGGGCTCAAGCATATATCCAACTAGCTGATTTGGACTTGGCTGAATTTGACATAAAGAAGGCTCTTGATATAGATCCGAATAACAGGGATGTGAAATTGGAATACAAAACTCTGAAGGAGAAGGTGAAGGAATACAATAAAAAAGATGCCAAGTTTTACGGTAACATGTTTGCCAAAATGAAGAAAGTAGAATCTGCATAA 1662 41.88 MDEDFDIPAAPDMADDLDLPDETVALKVGEEKEIGNQGLKKKLLKEGEGWVTPENGDEVEVHYTGTLLDGTQFDSSRDRGTPFKFTLGQGQVIKGWDLGIKTMKKNEKALFTIPPDLAYGESGSPPTIPPSATLQFDVELLSWTSVKDICKDGGIFKKILTEGDKWENPKDLDEVLVNFEAKLEDGTLVAKADGVEFTVADGYFCPSLAKAVKTMKLGEKALLTVKPQYGFGEKGKSACGNEGAVPPNASLDITLELVSWKTVSEVTPDKKVIKKILKEGEGYEKPNDGAIVKVKLIGKLGDGKIFLRKGHDNGEEPYEFKTDEEQVIDGIDKAVVTMKKGEIALLTIAPEYAFGSSESQQDLAVVPPNSTVYYEVELVAFDKEKESWDMNNQEKIEAAGKKKEEGNVLFKSGKFARASKRYEKAVKFIEYDSSFSEEEKKQAKALKVACNLNNAACKLKLKLYNEAEKLCTKVLELESSNVKALYRRAQAYIQLADLDLAEFDIKKALDIDPNNRDVKLEYKTLKEKVKEYNKKDAKFYGNMFAKMKKVESA* 554
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 19733043 19737043 - Chy1G014230.1 Chy01g01423 218604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g01423 553 Pfam Tetratricopeptide repeat 482 515 IPR001440 GO:0005515
Chy01g01423 553 PANTHER PEPTIDYLPROLYL ISOMERASE 272 380 - -
Chy01g01423 553 PANTHER PEPTIDYLPROLYL ISOMERASE 381 552 - -
Chy01g01423 553 PANTHER PEPTIDYLPROLYL ISOMERASE 1 268 - -
Chy01g01423 553 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 167 257 IPR001179 GO:0003755
Chy01g01423 553 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 283 379 IPR001179 GO:0003755
Chy01g01423 553 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 51 141 IPR001179 GO:0003755
Chy01g01423 553 ProSiteProfiles TPR repeat profile. 482 515 IPR019734 GO:0005515
Chy01g01423 553 Gene3D Tetratricopeptide repeat domain 385 542 IPR011990 GO:0005515
Chy01g01423 553 SMART tpr_5 399 432 IPR019734 GO:0005515
Chy01g01423 553 SMART tpr_5 448 481 IPR019734 GO:0005515
Chy01g01423 553 SMART tpr_5 482 515 IPR019734 GO:0005515
Chy01g01423 553 Gene3D - 148 261 IPR046357 GO:0003755
Chy01g01423 553 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 289 382 IPR001179 GO:0003755
Chy01g01423 553 Gene3D - 262 383 IPR046357 GO:0003755
Chy01g01423 553 Gene3D - 31 147 IPR046357 GO:0003755
Chy01g01423 553 SUPERFAMILY FKBP-like 148 264 - -
Chy01g01423 553 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 272 380 - -
Chy01g01423 553 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 381 552 - -
Chy01g01423 553 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 1 268 - -
Chy01g01423 553 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 172 261 IPR001179 GO:0003755
Chy01g01423 553 SUPERFAMILY FKBP-like 33 148 - -
Chy01g01423 553 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 56 144 IPR001179 GO:0003755
Chy01g01423 553 SUPERFAMILY TPR-like 387 547 IPR011990 GO:0005515
Chy01g01423 553 SUPERFAMILY FKBP-like 264 399 - -
Chy01g01423 553 Coils Coil 515 535 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g01423 Chy-Chr1:19733043 Chy06g00818 Chy-Chr6:5733954 0 dispersed
Chy11g01028 Chy-Chr11:14647236 Chy01g01423 Chy-Chr1:19733043 9.08E-12 dispersed
Chy01g01423 Chy-Chr1:19733043 Chy01g01424 Chy-Chr1:19740005 1.23E-26 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g01423 K09571 - csv:101214513 1026.93