Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Chy01g01470 | ATGGTTGTTGATGGCGCTGACAAGCCTGTCAATATTGTTGTTGGTTCTCAAATATGGGTGGGAGATATAGATTCTGTTTGGATTGATGGACTCGTACTGAACATCAATGGAGAAGATGCTGAGATTCAAACTAGTGATGGGAGGCAGGTGGTTGTAAAAATGTCAAATCTTTATCCAAGGGACGCAGAAGCTCCTGCTACAGGAATTGACGACATGACAAGAATGTCATATTTGAATGAGCCTGGGTTGCTGCATAATTTGGCAATCAGATATGCAATAAATGAAATTTATACTTATACTGGAAACATTCTTATTGCCATCAACCCATTCCAAAGCATTTCAAGTCTGTATGATGCCCATGTGATGGAGAAGTACAAGGGGGCACCAATTGGGGAGCTGAAGCCGCATGTTTTCGCAATTGCTGATGTTGCATATAGGGCTATGATAAATTATGGGAAAAGCAATTCCATTCTGGTAAGTGGTGAAAGTGGGGCCGGTAAGACTGAAACCACCAAAATGCTTATGTGTTACCTTGCATTTTTGGGCGGCCATGCTGCATCTGAAGGACGAACTGTTGAACAACAAGTTCTAGAATCGAATCCAGTTCTTGAAGCTTTTGGCAATGCAAAAACAGTGAGAAACAATAATTCAAGCCGGTTTGGGAAATTTGTTGAGATCCAATTCGACAAGAAGGGGAGAATATCAGGAGCTGCCATCAGAACTTATCTTCTTGAGAGATCACGGGTTTGTCAAATATCAGACCCTGAGCGCAATTATCATTGCTTTTACCTTCTCTGTGCAGCTCCACCTCAGGAGAGAGAGAGATATAAGCTGGGAAATCCAAAATCATTTCACTATCTAAACCAATCAAATTGTTATGAACTGGCTGGTGTGAATGATGCCCATGATTATCTTGCGACAAAGAGAGCCATGGATATTGTTGGAATAGGTGAACAAGAGCAGGATGCAATTTTCAGAGTTGTGGCTGCAATTCTCCATCTGGGTAATATTGAATTTGCAAAAGGAGAAGAGTCTGATTCATCATTTGTAAAAGATGAAGAATCAAAATTTCATCTTCACATGACAGCAGAGCTTCTCATGTGTGATCCCAATGCATTAGAAGATGCTCTTTGCAAGCGCATGATGGTTACACCGGAGGAAGTCATCAAGAGAAGTCTTGATCCACATGGTGCAACAGTTAGCAGGGATGGATTAGCCAAGACAATATACTCTCGTTTGTTTGACTGGTTGGTAGATAAAATCAATGTATCCATCGGACAAGATCCTTGCTCAAAGTATCTGATCGGAGTACTTGATATTTATGGTTTTGAGAGCTTTCAAACAAATAGTTTTGAGCAATTCTGCATCAATTACACAAATGAAAAGCTGCAGCAACATTTCAACCAGCACGTATTCAAGATGGAGCAAGAAGAATATGTAAAAGAGGAAATTGATTGGAGCTACATTGAGTTTATTGATAATCAAGATGTCCTTGATCTGATTGAGAAGAAGCCAGGTGGAATCATTGCTCTTCTTGATGAAGCTTGCATGTTCCCAAAATCAAATCATGAAACATTTTCACAAAAGCTATATCAGACCTTCAAAAATCATAAACGCTTCACCAAGCCAAAATTGGCCCGCTCAGATTTTACGATTGTTCATTATGCTGGAGATGTTCTATATCAGTCAGATCAGTTTCTAGACAAAAATAAAGATTATGTTGTCTCTGAACATCAAGATTTGTTAAGTGCTTCAAAATGTGCTTTTGTCGGTGGTCTCTTCTCTCCTCATCCTGAGGAGACGGCCAAATCATCAAAGTTTTCTTCAATTGGCTCTCGTTTTAAGTTACAACTACAGCAGTTGATGGAAACGTTAAATTCAACCCAACCCCACTATATAAGATGCGTGAAGCCCAATACTGTTCTACAACCAGCCATCTTTGAGAATGCTACTGTCATGCAACAATTACGCTCTGGAGGCGTTTTGGAGGCAATTAGAATCAAATGTGCAGGATACCCTACTCATAGAACATTTTCCGAATTTTTATCTCGATTCGGAATTCTTGCACCCGAGGTATTGGAAGGGGACTATGAAGAGAAGGTAGCGTGCGAAAAGATTCTAGAGAAGATGGGACTTAAAGGTTATCTGATAGGGCAATCAAAAATTTTCCTGAGAGGTAATTTGATGGCCGAACTAGATGCACGAAGAACAGGAATACATTGTGCCGCTGCTGTAGTTATACAGAAGCATGCCAGAGCTCGAGTTGATCTTAGAAAGTACATTGCCATGCGAAGAGCTTGCATTCGTCTACAGTCGTATTGGAGAGGTGTTCTTGCCCGGGAGTCATATGAAATTAGAAGAAGGGAAGCAGCTGCCATCAAAATTCAAAAGATTATCCGTGCATACCTTGCCAGGAACCTCCATGTTAAAACGAGGATCTCAACAGTTGTTATTCAGGCTGGTATGCGTGCCATGGTTGCTCGGAGTGCATACAGACATACAAGGCAGGTTAAGGCTGTGAACGTTATTCAATCTTATTGGCGTCAGTATAGAACCTCGCCGAAGTATAATACAGTTAGAAAATCATCAACCAGTTCACAATGTGGATCAAACTCAAAAACTTCTGGTGAAGGTCTTAAGAAGCAAAGGATGACTAACTTGGAAGAAACAGAGGAGGATCTGGTTTTGCCGACATTGCTCGACAACGGTAGAGACACCATTGATGAAACAATTGAAATGATTGCCAAGGAAAGCTGTGTTTCTCCACAGGAAATAGAAGAAGCATACTTTATTGTTAAAGAACCCAGTAGTCCGGTTAAAGATGCAGATAAAGTGGCCACTCTCAGAGCAGAAGTGGCTAATCTAAAGGCCATGCTGATGGCTGAAAGGCAAAGAGCTAATGAGTGTGAAAGGAATTATGTTGTAACGCAGAAAGCAAATGAGGAAGGACGTAAAAAACTAAAAGAAACAGAAAGGAAAGTACGTCAACTTCAGGACTACATAAACAGGATGATACATTGCATGTCAAACCAAATCTCGGAGATGAAAATGATCGTGGGTACTTCTAGTTCAGATGCATCTAATTCTTTTCTGAACGAGGTTTTGACAGATGCCACATCTAGTTGCTCTGATTCATCATCAGAAGACTTCACCTTTCCTGTTCCAAGTTCATCTGTGCCAACTTTCTCTTCATTCGGTACCAACACTTTTCAGCTGATTGTGCAGGATATTTCAGCAGCAGAAATTCCAGGATCTGAAAGTGACAGGGAAGGAGGATTCTCTGACTACTTCTAA | 3294 | 40.74 | MVVDGADKPVNIVVGSQIWVGDIDSVWIDGLVLNINGEDAEIQTSDGRQVVVKMSNLYPRDAEAPATGIDDMTRMSYLNEPGLLHNLAIRYAINEIYTYTGNILIAINPFQSISSLYDAHVMEKYKGAPIGELKPHVFAIADVAYRAMINYGKSNSILVSGESGAGKTETTKMLMCYLAFLGGHAASEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKKGRISGAAIRTYLLERSRVCQISDPERNYHCFYLLCAAPPQERERYKLGNPKSFHYLNQSNCYELAGVNDAHDYLATKRAMDIVGIGEQEQDAIFRVVAAILHLGNIEFAKGEESDSSFVKDEESKFHLHMTAELLMCDPNALEDALCKRMMVTPEEVIKRSLDPHGATVSRDGLAKTIYSRLFDWLVDKINVSIGQDPCSKYLIGVLDIYGFESFQTNSFEQFCINYTNEKLQQHFNQHVFKMEQEEYVKEEIDWSYIEFIDNQDVLDLIEKKPGGIIALLDEACMFPKSNHETFSQKLYQTFKNHKRFTKPKLARSDFTIVHYAGDVLYQSDQFLDKNKDYVVSEHQDLLSASKCAFVGGLFSPHPEETAKSSKFSSIGSRFKLQLQQLMETLNSTQPHYIRCVKPNTVLQPAIFENATVMQQLRSGGVLEAIRIKCAGYPTHRTFSEFLSRFGILAPEVLEGDYEEKVACEKILEKMGLKGYLIGQSKIFLRGNLMAELDARRTGIHCAAAVVIQKHARARVDLRKYIAMRRACIRLQSYWRGVLARESYEIRRREAAAIKIQKIIRAYLARNLHVKTRISTVVIQAGMRAMVARSAYRHTRQVKAVNVIQSYWRQYRTSPKYNTVRKSSTSSQCGSNSKTSGEGLKKQRMTNLEETEEDLVLPTLLDNGRDTIDETIEMIAKESCVSPQEIEEAYFIVKEPSSPVKDADKVATLRAEVANLKAMLMAERQRANECERNYVVTQKANEEGRKKLKETERKVRQLQDYINRMIHCMSNQISEMKMIVGTSSSDASNSFLNEVLTDATSSCSDSSSEDFTFPVPSSSVPTFSSFGTNTFQLIVQDISAAEIPGSESDREGGFSDYF* | 1098 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 20409567 | 20436672 | + | Chy1G014700.1 | Chy01g01470 | 218651 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Chy01g01470 | 1097 | Gene3D | - | 257 | 315 | - | - | |
| Chy01g01470 | 1097 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 790 | 860 | IPR027417 | - | |
| Chy01g01470 | 1097 | ProSiteProfiles | IQ motif profile. | 811 | 839 | IPR000048 | GO:0005515 | |
| Chy01g01470 | 1097 | SMART | iq_5 | 810 | 832 | IPR000048 | GO:0005515 | |
| Chy01g01470 | 1097 | SMART | iq_5 | 787 | 809 | IPR000048 | GO:0005515 | |
| Chy01g01470 | 1097 | SMART | iq_5 | 739 | 761 | IPR000048 | GO:0005515 | |
| Chy01g01470 | 1097 | SMART | iq_5 | 762 | 784 | IPR000048 | GO:0005515 | |
| Chy01g01470 | 1097 | SMART | iq_5 | 835 | 857 | IPR000048 | GO:0005515 | |
| Chy01g01470 | 1097 | Gene3D | Kinesin motor domain | 70 | 667 | IPR036961 | - | |
| Chy01g01470 | 1097 | Gene3D | - | 672 | 738 | - | - | |
| Chy01g01470 | 1097 | ProSiteProfiles | Myosin N-terminal SH3-like domain profile. | 13 | 62 | IPR004009 | GO:0003774|GO:0005524|GO:0016459 | |
| Chy01g01470 | 1097 | Pfam | IQ calmodulin-binding motif | 814 | 832 | IPR000048 | GO:0005515 | |
| Chy01g01470 | 1097 | Pfam | IQ calmodulin-binding motif | 764 | 783 | IPR000048 | GO:0005515 | |
| Chy01g01470 | 1097 | Pfam | IQ calmodulin-binding motif | 790 | 806 | IPR000048 | GO:0005515 | |
| Chy01g01470 | 1097 | MobiDBLite | consensus disorder prediction | 858 | 881 | - | - | |
| Chy01g01470 | 1097 | SMART | MYSc_2a | 61 | 738 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Chy01g01470 | 1097 | Gene3D | - | 790 | 840 | - | - | |
| Chy01g01470 | 1097 | Gene3D | - | 740 | 789 | - | - | |
| Chy01g01470 | 1097 | Pfam | Myosin head (motor domain) | 70 | 725 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Chy01g01470 | 1097 | Gene3D | - | 444 | 628 | - | - | |
| Chy01g01470 | 1097 | CDD | MYSc_Myo11 | 81 | 725 | IPR036018 | - | |
| Chy01g01470 | 1097 | Gene3D | Myosin VI head, motor domain, U50 subdomain | 317 | 606 | - | - | |
| Chy01g01470 | 1097 | ProSiteProfiles | IQ motif profile. | 763 | 792 | IPR000048 | GO:0005515 | |
| Chy01g01470 | 1097 | PRINTS | Myosin heavy chain signature | 154 | 179 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Chy01g01470 | 1097 | PRINTS | Myosin heavy chain signature | 487 | 515 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Chy01g01470 | 1097 | PRINTS | Myosin heavy chain signature | 97 | 116 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Chy01g01470 | 1097 | PRINTS | Myosin heavy chain signature | 201 | 228 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Chy01g01470 | 1097 | PRINTS | Myosin heavy chain signature | 434 | 462 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Chy01g01470 | 1097 | ProSiteProfiles | IQ motif profile. | 788 | 815 | IPR000048 | GO:0005515 | |
| Chy01g01470 | 1097 | ProSiteProfiles | Myosin motor domain profile. | 67 | 737 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Chy01g01470 | 1097 | Coils | Coil | 945 | 972 | - | - | |
| Chy01g01470 | 1097 | PANTHER | MYOSIN | 10 | 1077 | - | - | |
| Chy01g01470 | 1097 | Coils | Coil | 980 | 1000 | - | - | |
| Chy01g01470 | 1097 | PANTHER | MYOSIN MOTOR DOMAIN PROTEIN AND DIL DOMAIN PROTEIN | 10 | 1077 | - | - | |
| Chy01g01470 | 1097 | MobiDBLite | consensus disorder prediction | 858 | 882 | - | - | |
| Chy01g01470 | 1097 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 41 | 790 | IPR027417 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Chy01g01470 | Chy-Chr1:20409567 | Chy05g01222 | Chy-Chr5:16631061 | 0 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Chy01g01470 | K10357 | - | csv:101220626 | 2092.78 |