Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g01472 ATGGCAGCCTCTTCTTCTTCTTCTCCTCCTCCATGTGGAGCTTGCAAATTTCTTAGAAGAAAGTGTGTCAATGGTTGCATCTTTGCTCCTTATTTCCGCCACGAGCTTGGCGCCTCTCACTTCTCCGCCATCCACAAAGTTTTTGGTGCGAGCAACGCTTCCAAGCTTCTCGCTCACCTCCCTGTCTCCCACCGTTGCGAAGCGGCCGTGACCATCTCATATGAAGCTCAAGCGAGACTTCAAGATCCGATCTATGGTTGCGTTTCTCATATTATCGCTCTCCAACAACAGGTTATGAATCTAAGGGCTCAAGTGGCTTATTTAAGAGAACAAGCAGCACAAATTCTTCTCAACAATTATACCACAAGAAACCCTACTGAATTACTTCATGAAAAGTCTCCATTTTGTTATTCCGATGACCCATTCTTAGATCTTCAAAGCTGGCTTCTGGCGGAGAGCTGCAGCGCCACCGCACCGGAGCTTGAACCTGCGGCGGTGCCGTACTTTGAGATGAGTGTCGTCGATTCAAAACTCGCCGGAGATTTCTGTTGCTAA 555 47.93 MAASSSSSPPPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHLPVSHRCEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVAYLREQAAQILLNNYTTRNPTELLHEKSPFCYSDDPFLDLQSWLLAESCSATAPELEPAAVPYFEMSVVDSKLAGDFCC* 185
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 20462152 20462925 + Chy1G014720.1 Chy01g01472 218653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g01472 184 Coils Coil 91 111 - -
Chy01g01472 184 ProSiteProfiles LOB domain profile. 10 112 IPR004883 -
Chy01g01472 184 Pfam Lateral organ boundaries (LOB) domain 11 108 IPR004883 -
Chy01g01472 184 PANTHER LOB DOMAIN CONTAINING PROTEIN 9 128 - -
Chy01g01472 184 PANTHER LOB DOMAIN-CONTAINING PROTEIN 17-RELATED 9 128 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g01472 Chy-Chr1:20462152 Chy04g01053 Chy-Chr4:15596263 3.84E-51 dispersed
Chy01g01472 Chy-Chr1:20462152 Chy06g00237 Chy-Chr6:1572197 1.56E-43 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17336 PF03195 LOB 1.80E-34 No_clan Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g01472 K13945 - csv:101220863 367.851