Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g01478 ATGGATTCGGCGAGGAGTTGGTTTAATCAGCGTAGAGATAGGTTGAGGGGTTCTACAAAGAAGAAGGATAATAGTATGGGAGAGAATGAGGATTCTACTGCTACTGATCAAATGGATGAGGAAGCGCTTTCTAATATCACTAAGCAGAAGGAACGTCTGCAGAAGAGGAGGGAGCGCATGAGGATTAGAAACAAAGAGCTACAGGCTGCAGCCATCAAGCCAGCATTTGATGGATATAGCTACTCTGAAGTTGAAATTCCAGTACGAAATGTATTGGAAAAGAAGTTGGCTGATGCTGATGTATCTGAAGAAGATCAAAATAATCTACTGAAGTTCTTAGAGAAGAAGGAAACTGAATACATGCGCCTCCAAAGGCACAAAATGGGAGTTGATGATTTCGATTTACTAACAATTATTGGCAAAGGTGCTTTTGGGGAGGTTCGTGTTTGTAGAGAGAAGACTACAGGTCAGGTGTATGCTATGAAAAAGCTTAAAAAATCAGAGATGCTTCGAAGGGGCCAGGTAGAACATGTGAGAGCTGAAAGAAATCTGCTTGCTGAAGTAGACAGCAATTGTATTGTGAAACTCTATTGTTCGTTTCAAGATGATGAGTTTCTTTATCTTATTATGGAGTACCTACCTGGTGGAGATATGATGACTTTATTGATGAGAAAGGATACTTTGACTGAAGATGAAGCGAGGTTTTATGTTGGAGAGATAGTTTTGGCTATTGAATCTATTCATAAGCACAATTACATTCATAGAGATATTAAGCCTGACAACTTGCTGCTTGATAAATTTGGGCACTTGAGACTCTCAGACTTTGGATTATGCAAACCATTAGATTGCAGTATACTCCGGGAACAAGATTTTGATATAGGGAGTACCCGTAATGGAGCTGGGCAAAATGATGAACGCAATGCAACTCCTCGTACTCAACAAGAGCAACTACAACATTGGCAGAAGAATCGAAGAATGCTTGCTTATTCAACAGTTGGAACCCCCGATTATATTGCTCCAGAGGTTTTGTTGAAGAAGGGTTATGGCATGGAATGTGACTGGTGGTCACTTGGAGCTATTATGTATGAAATGCTTGTTGGTTATCCACCTTTTTACTCTGATGATCCAATGTCGACTTGTCGGAAGATAGTGAACTGGAGAACTCATTTGAAGTTCCCTGACGAGGCAAAGCTATCCCTCTTGGCAAAAGATCTCATTAGTAAACTACTATGCAATGTTAACCAGAGGCTCGGTACAAATGGCGCGGATGAAATTAAGGTTCATTCGTGGTTTGAAGGCACTGAATGGGATAGGCTATACCAAATGGAAGCTGCATTTGTTCCTGAGGTTAAAGATGAGCTAGACACTCAAAATTTTGAAAAGTTTGAAGAGTCTGACTCGCAAAGCAGTACTTCATCTAAAACTGGACCATGGAGAAAGATGCTTTCATCGAAGGACATCAACTTTGTTGGATACACTTATAAAAACTTCGAAATTGTCAACGATTATCAATTGCCTGGGATGGCTGAATTGAAGAAGAAATGCAGCAAACCAAAAAGACCGTCAATAAAATCACTCTTTGATGGCGAGTTGGAGGAAGGTGACGCATCTGATACACCTAGTCATAGTCACCAGCAAACTGGAGGAAGCTTTTCGAACTCAATGACATCTCCTAAAATGGATGATGTTGATATGAGAAAAGAGTCGATGTAA 1713 40.4 MDSARSWFNQRRDRLRGSTKKKDNSMGENEDSTATDQMDEEALSNITKQKERLQKRRERMRIRNKELQAAAIKPAFDGYSYSEVEIPVRNVLEKKLADADVSEEDQNNLLKFLEKKETEYMRLQRHKMGVDDFDLLTIIGKGAFGEVRVCREKTTGQVYAMKKLKKSEMLRRGQVEHVRAERNLLAEVDSNCIVKLYCSFQDDEFLYLIMEYLPGGDMMTLLMRKDTLTEDEARFYVGEIVLAIESIHKHNYIHRDIKPDNLLLDKFGHLRLSDFGLCKPLDCSILREQDFDIGSTRNGAGQNDERNATPRTQQEQLQHWQKNRRMLAYSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSDDPMSTCRKIVNWRTHLKFPDEAKLSLLAKDLISKLLCNVNQRLGTNGADEIKVHSWFEGTEWDRLYQMEAAFVPEVKDELDTQNFEKFEESDSQSSTSSKTGPWRKMLSSKDINFVGYTYKNFEIVNDYQLPGMAELKKKCSKPKRPSIKSLFDGELEEGDASDTPSHSHQQTGGSFSNSMTSPKMDDVDMRKESM* 571
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 20526090 20535700 - Chy1G014780.1 Chy01g01478 218659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g01478 570 MobiDBLite consensus disorder prediction 1 57 - -
Chy01g01478 570 ProSiteProfiles AGC-kinase C-terminal domain profile. 432 504 IPR000961 GO:0004674|GO:0005524|GO:0006468
Chy01g01478 570 SMART pkinase_C_6 432 496 IPR000961 GO:0004674|GO:0005524|GO:0006468
Chy01g01478 570 SUPERFAMILY Protein kinase-like (PK-like) 106 484 IPR011009 -
Chy01g01478 570 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 89 536 - -
Chy01g01478 570 PANTHER SERINE/THREONINE-PROTEIN KINASE 89 536 - -
Chy01g01478 570 Coils Coil 43 70 - -
Chy01g01478 570 ProSitePatterns Protein kinases ATP-binding region signature. 139 162 IPR017441 GO:0005524
Chy01g01478 570 Pfam Protein kinase C terminal domain 450 494 IPR017892 GO:0004674|GO:0005524|GO:0006468
Chy01g01478 570 Gene3D Transferase(Phosphotransferase) domain 1 323 451 - -
Chy01g01478 570 Gene3D Transferase(Phosphotransferase) domain 1 217 293 - -
Chy01g01478 570 ProSitePatterns Serine/Threonine protein kinases active-site signature. 252 264 IPR008271 GO:0004672|GO:0006468
Chy01g01478 570 Gene3D Phosphorylase Kinase; domain 1 104 216 - -
Chy01g01478 570 MobiDBLite consensus disorder prediction 519 539 - -
Chy01g01478 570 MobiDBLite consensus disorder prediction 519 570 - -
Chy01g01478 570 ProSiteProfiles Protein kinase domain profile. 133 431 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy01g01478 570 CDD STKc_NDR_like 131 495 - -
Chy01g01478 570 SMART serkin_6 133 431 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy01g01478 570 Pfam Protein kinase domain 135 431 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy01g01478 570 MobiDBLite consensus disorder prediction 540 559 - -
Chy01g01478 570 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g01478 Chy-Chr1:20526090 Chy05g00316 Chy-Chr5:3138712 0 dispersed
Chy01g01478 Chy-Chr1:20526090 Chy02g01246 Chy-Chr2:9075709 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
70997 PF00069 Pkinase 1.90E-62 CL0016 Chy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g01478 K08790 - csv:101221720 1053.51