Cucurbitales platform

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Chy01g01512	ATGTCAATTCTTAGTGATTTGTTTGGTAATTACCAAGAAAATTTCTTGTGGAACAATGATCACAATCAGAGTTTTATTTCCGGGGAAGAGAGTTCATTTGACTTCAATTACTTGAACGATATGTTGTTTGATGATATGGTTTTTGCAGCGGCCGAAGAGACGATGTCGTCTTCGGATTCAAGCTCTTGCTCGTCTCCGATTGAGATGCAAGTTAAGGAGGAGGTGGTGGAGGTGGATGTGGAGGAAGGGAGTTTTTGTGATGAGGTCGTTGTGGAGGAAGATCAATCACATAAGGAGGAGAGGGTTTACCGAGGGGTACGGAGGAGGCCGTGGGGGAAGTATGCAGCCGAGATTAGGGATTCAACACGACAAGGGGTGAGAGTGTGGTTGGGGACGTTTGATAGCGCCGAGGCAGCTGCGTTGGCGTATGACCAAGCCGCATTTTGTATGAGAGGAGGGTTAGCCACGCTCAACTTTCCGATCGAGGTTGTTCGAGAGTCGCTTCGGGAAATGAAGTATCGGTGGGAGGTCGGGAGCTCGCCGGTCTTGGCGCTTAAGCGGCGCCACTCCATACAGAGGAAGAGGATGGCTGAAGTGGAGAAGATGGAGAAGAAGATGATGAAGAAGAAGAAGAAAAGTGTAGTTGTTTTTGAGGATTTGGGTGTTGAGTACTTGGAAGAACTTTTAAGTTTGACTTCTTAA	702	47.44	MSILSDLFGNYQENFLWNNDHNQSFISGEESSFDFNYLNDMLFDDMVFAAAEETMSSSDSSSCSSPIEMQVKEEVVEVDVEEGSFCDEVVVEEDQSHKEERVYRGVRRRPWGKYAAEIRDSTRQGVRVWLGTFDSAEAAALAYDQAAFCMRGGLATLNFPIEVVRESLREMKYRWEVGSSPVLALKRRHSIQRKRMAEVEKMEKKMMKKKKKSVVVFEDLGVEYLEELLSLTS*	234

Gff information

Chromosome	Start	End	Strand	Old_gene	Gene	Num
1	20800829	20801530	-	Chy1G015120.1	Chy01g01512	218693

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Chy01g01512	233	Pfam	AP2 domain	102	152	IPR001471	GO:0003700\|GO:0006355
	Chy01g01512	233	PRINTS	Ethylene responsive element binding protein signature	126	142	IPR001471	GO:0003700\|GO:0006355
	Chy01g01512	233	PRINTS	Ethylene responsive element binding protein signature	103	114	IPR001471	GO:0003700\|GO:0006355
	Chy01g01512	233	SMART	rav1_2	102	166	IPR001471	GO:0003700\|GO:0006355
	Chy01g01512	233	SUPERFAMILY	DNA-binding domain	102	162	IPR016177	GO:0003677
	Chy01g01512	233	ProSiteProfiles	AP2/ERF domain profile.	102	160	IPR001471	GO:0003700\|GO:0006355
	Chy01g01512	233	Gene3D	AP2/ERF domain	102	163	IPR036955	GO:0003700\|GO:0006355
	Chy01g01512	233	PANTHER	ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1B	31	231	-	-
	Chy01g01512	233	PANTHER	DNA-BINDING DOMAIN	31	231	IPR044808	GO:0003700\|GO:0009873
	Chy01g01512	233	CDD	AP2	103	161	IPR001471	GO:0003700\|GO:0006355

Event-related genes

Select	Gene_1	Gene_2	Event_name
	Chy01g01512	Chy04g01070	CCT

Duplication type information

Select	Gene1	Location1	Gene2	Location2	E-value	Duplicated-type
	Chy01g01512	Chy-Chr1:20800829	Chy06g00479	Chy-Chr6:3204245	4.06E-45	dispersed
	Chy01g01512	Chy-Chr1:20800829	Chy04g01070	Chy-Chr4:16050519	2.04E-50	transposed

Transcription factors information

Select	Gene	Hmm_acc	Hmm_name	Score	E-value	Regulatory Factors	Family
	17340	PF00847	AP2	4.60E-15	CL0081	Chy	TF

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Chy01g01512	K14516		-	csv:101205053	382.874