Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Chy01g01525 | ATGATGGAAGAGGTTGAAGAAGCTAATAGGGAAGCTGTTGAGAGTTGTCATAAAGTGTTGAATCTCTTGACTGTGGCTTCCTCATCTCAAGATCAGTTGAAGCTTAGGAGTTGTTTAATGGCGGAAACTGGAGAGGCTGTGTTTAAGTTTAGGAAAGTTCTGTGTCTTCTTGATTCTTCTGGGTTGGGTCATGCAAGGGTCAGGAAAAAGAAGAAGGTCAACAACTTTTTGTTTAATTCCTCCTCCTCTTCTTCTTCTTCTTCCCCTTTTCCTCTTCCCCAATCTTTGTTCTTAGAAACTTATTCCCCTGATTGCAGAATGGACCTTCTCCAGGGCAGGAATTTGCAGATGGGTCCTCTTTGTTTGGGGAACCCATCTTTGGAATTGAACACAAATGCCAAAAGTTGTTCAATCCAACAAATACAATCTCAATCTGCTGCTCTTAATCATCATCGTCATCATCATCATCATCACTTGCTTCAGAACAGGGTGGTGTTGAATAATAATCCTAATCCTCCTCAGCCTGAAATGGTGTATCTTAGGAGCAATAATGGTGTTAACTTGAATTTTGATAGCTCTAGCTGCACACAACACACACTGTCATCCACTAGGTCGTTTATTTCTTCATTGAGCATTGATGGGAGTGTGGCTAACTTGGATGGGAGTGCCTTCCATTTGATTGGGGCGCCCCGGTCTTCCGATCAGAATTCGTATCATAAGAGGAAATGCAATGGGAGAGGGGAAGATGGGAGTGTTAAATGTGGAAGCAATGGGAGATGTCACTGCTCAAAGAAGAGGAAACATAGAGTGAAACGGTCGATCAAGGTACCCGCGATTAGTAACAAGCTTGCAGATATCCCTCCTGATGATTATTCATGGAGGAAATATGGCCAAAAGCCAATCAAGGGTTCTCCACACCCAAGAGGATACTATAAGTGCAGCAGCATGAGAGGTTGTCCAGCAAGAAAGCACGTTGAGCGGTGTCTCGAAGAACCTTCAATGCTCATTGTTACATATGAAGGTGAACACAACCATCCTAGAATACCTTCTCAACCTGCAAATACTTGA | 1068 | 43.07 | MMEEVEEANREAVESCHKVLNLLTVASSSQDQLKLRSCLMAETGEAVFKFRKVLCLLDSSGLGHARVRKKKKVNNFLFNSSSSSSSSSPFPLPQSLFLETYSPDCRMDLLQGRNLQMGPLCLGNPSLELNTNAKSCSIQQIQSQSAALNHHRHHHHHHLLQNRVVLNNNPNPPQPEMVYLRSNNGVNLNFDSSSCTQHTLSSTRSFISSLSIDGSVANLDGSAFHLIGAPRSSDQNSYHKRKCNGRGEDGSVKCGSNGRCHCSKKRKHRVKRSIKVPAISNKLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEEPSMLIVTYEGEHNHPRIPSQPANT* | 356 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 21049887 | 21051636 | + | Chy1G015250.1 | Chy01g01525 | 218706 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Chy01g01525 | 355 | SMART | WRKY_cls | 287 | 347 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
| Chy01g01525 | 355 | SUPERFAMILY | WRKY DNA-binding domain | 285 | 347 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
| Chy01g01525 | 355 | Pfam | WRKY DNA -binding domain | 289 | 346 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
| Chy01g01525 | 355 | Pfam | Plant zinc cluster domain | 240 | 285 | IPR018872 | - | |
| Chy01g01525 | 355 | ProSiteProfiles | WRKY domain profile. | 282 | 348 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
| Chy01g01525 | 355 | PANTHER | WRKY DNA-BINDING PROTEIN 21-RELATED | 3 | 355 | - | - | |
| Chy01g01525 | 355 | PANTHER | WRKY TRANSCRIPTION FACTOR 21-RELATED | 3 | 355 | IPR044810 | GO:0003700 | |
| Chy01g01525 | 355 | Gene3D | WRKY domain | 271 | 349 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Chy01g01525 | Chy05g00406 | CCT |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Chy01g01525 | Chy-Chr1:21049887 | Chy05g00406 | Chy-Chr5:4332849 | 5.51E-121 | dispersed | |
| Chy01g01523 | Chy-Chr1:21045659 | Chy01g01525 | Chy-Chr1:21049887 | 8.42E-25 | proximal |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 17342 | PF03106 | WRKY | 3.60E-26 | CL0274 | Chy | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Chy01g01525 | - | - | csv:101216822 | 628.632 |