Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g01540 ATGGCTAACAATCATTCCGATACTCAAGCCGATGATTTCCTCGAACAGATTCTTGGGATCCCTTTTGGTTCCTCCGACCAAGGATTAGCTGGAACTGACGGCGGATTGGCCGGAGCAGCAGCAGCAGCTGCTGCGGCGGCGGCTCAGGGTCAGGCTCCGATGATGCTTCAGCTTAGCTCCGGCGATGGCGGTGGTCATATCACTACGATTGGGAGTGGAAGTGTCGGTGGAACTGGGTTTCATGGCGGACCCCCTTTTCCTCTGGGGTTGAGTTTGGACCAAGGGAAGAGTGGGTTTCTTAAGGCTGAGGAAGCTTCTGGAAGTGGCAAACGGTATTGTGGTGAGGTTGTTGATGTTCGAGCTTCGTCTGTTAAAAATGTTTTTCAAGGCCAACAAATGCATGCTACTATGGGTGCAGCCCCGCATCCACCAGCAATGCGCCCTAGGGTACGGGCAAGACGAGGACAGGCCACTGATCCACATAGTATTGCAGAGCGGTTACGAAGAGAAAGGATTGCAGAGAGAATTAGGGCTTTGCAGGAACTTGTACCGAGTGTTAATAAGACGGATAGAGCTGCAATGCTTGATGAAATAGTAGACTACGTAAAGTTCCTTCGCCTTCAAGTAAAGGTTCTGAGCATGAGTAGATTGGGTGGAGCTGGTGCTGTGGCACCACTTGTAACGGATATTCCACTATCATCAGTTGAGGAAGAAGGAAGTGAAGGTGGTAGGAACCAACCGGCATGGGACAAGTGGTCGAACGATGGTACAGAGAGACAAGTTGCTAAACTTATGGAAGAAAACGTGGGAGCTGCTATGCAATTCCTACAATCAAAGGCACTCTGCATAATGCCGATCTCATTGGCTTCAGCAATTTATCACACACAACCTCCCGATAGCTCGAGTGTTGTGAAGCCAGAGAGTAATCCTCCTCCATAG 939 50.05 MANNHSDTQADDFLEQILGIPFGSSDQGLAGTDGGLAGAAAAAAAAAAQGQAPMMLQLSSGDGGGHITTIGSGSVGGTGFHGGPPFPLGLSLDQGKSGFLKAEEASGSGKRYCGEVVDVRASSVKNVFQGQQMHATMGAAPHPPAMRPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPSVNKTDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAPLVTDIPLSSVEEEGSEGGRNQPAWDKWSNDGTERQVAKLMEENVGAAMQFLQSKALCIMPISLASAIYHTQPPDSSSVVKPESNPPP* 313
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 21226903 21229844 - Chy1G015400.1 Chy01g01540 218721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g01540 312 SMART finulus 162 211 IPR011598 GO:0046983
Chy01g01540 312 Pfam Helix-loop-helix DNA-binding domain 161 205 IPR011598 GO:0046983
Chy01g01540 312 MobiDBLite consensus disorder prediction 137 160 - -
Chy01g01540 312 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 156 205 IPR011598 GO:0046983
Chy01g01540 312 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 154 215 IPR036638 GO:0046983
Chy01g01540 312 Gene3D - 151 213 IPR036638 GO:0046983
Chy01g01540 312 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 7 300 - -
Chy01g01540 312 PANTHER TRANSCRIPTION FACTOR UNE12-RELATED 7 300 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g01540 Chy-Chr1:21226903 Chy05g01238 Chy-Chr5:16774374 8.02E-57 dispersed
Chy01g01540 Chy-Chr1:21226903 Chy02g02104 Chy-Chr2:25359984 4.52E-60 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17345 PF00010 HLH 1.20E-07 No_clan Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g01540 - - csv:101218718 481.1