Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Chy01g01540 | ATGGCTAACAATCATTCCGATACTCAAGCCGATGATTTCCTCGAACAGATTCTTGGGATCCCTTTTGGTTCCTCCGACCAAGGATTAGCTGGAACTGACGGCGGATTGGCCGGAGCAGCAGCAGCAGCTGCTGCGGCGGCGGCTCAGGGTCAGGCTCCGATGATGCTTCAGCTTAGCTCCGGCGATGGCGGTGGTCATATCACTACGATTGGGAGTGGAAGTGTCGGTGGAACTGGGTTTCATGGCGGACCCCCTTTTCCTCTGGGGTTGAGTTTGGACCAAGGGAAGAGTGGGTTTCTTAAGGCTGAGGAAGCTTCTGGAAGTGGCAAACGGTATTGTGGTGAGGTTGTTGATGTTCGAGCTTCGTCTGTTAAAAATGTTTTTCAAGGCCAACAAATGCATGCTACTATGGGTGCAGCCCCGCATCCACCAGCAATGCGCCCTAGGGTACGGGCAAGACGAGGACAGGCCACTGATCCACATAGTATTGCAGAGCGGTTACGAAGAGAAAGGATTGCAGAGAGAATTAGGGCTTTGCAGGAACTTGTACCGAGTGTTAATAAGACGGATAGAGCTGCAATGCTTGATGAAATAGTAGACTACGTAAAGTTCCTTCGCCTTCAAGTAAAGGTTCTGAGCATGAGTAGATTGGGTGGAGCTGGTGCTGTGGCACCACTTGTAACGGATATTCCACTATCATCAGTTGAGGAAGAAGGAAGTGAAGGTGGTAGGAACCAACCGGCATGGGACAAGTGGTCGAACGATGGTACAGAGAGACAAGTTGCTAAACTTATGGAAGAAAACGTGGGAGCTGCTATGCAATTCCTACAATCAAAGGCACTCTGCATAATGCCGATCTCATTGGCTTCAGCAATTTATCACACACAACCTCCCGATAGCTCGAGTGTTGTGAAGCCAGAGAGTAATCCTCCTCCATAG | 939 | 50.05 | MANNHSDTQADDFLEQILGIPFGSSDQGLAGTDGGLAGAAAAAAAAAAQGQAPMMLQLSSGDGGGHITTIGSGSVGGTGFHGGPPFPLGLSLDQGKSGFLKAEEASGSGKRYCGEVVDVRASSVKNVFQGQQMHATMGAAPHPPAMRPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPSVNKTDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAPLVTDIPLSSVEEEGSEGGRNQPAWDKWSNDGTERQVAKLMEENVGAAMQFLQSKALCIMPISLASAIYHTQPPDSSSVVKPESNPPP* | 313 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 21226903 | 21229844 | - | Chy1G015400.1 | Chy01g01540 | 218721 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Chy01g01540 | 312 | SMART | finulus | 162 | 211 | IPR011598 | GO:0046983 | |
Chy01g01540 | 312 | Pfam | Helix-loop-helix DNA-binding domain | 161 | 205 | IPR011598 | GO:0046983 | |
Chy01g01540 | 312 | MobiDBLite | consensus disorder prediction | 137 | 160 | - | - | |
Chy01g01540 | 312 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 156 | 205 | IPR011598 | GO:0046983 | |
Chy01g01540 | 312 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 154 | 215 | IPR036638 | GO:0046983 | |
Chy01g01540 | 312 | Gene3D | - | 151 | 213 | IPR036638 | GO:0046983 | |
Chy01g01540 | 312 | PANTHER | TRANSCRIPTION FACTOR BHLH83-RELATED | 7 | 300 | - | - | |
Chy01g01540 | 312 | PANTHER | TRANSCRIPTION FACTOR UNE12-RELATED | 7 | 300 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Chy01g01540 | Chy-Chr1:21226903 | Chy05g01238 | Chy-Chr5:16774374 | 8.02E-57 | dispersed | |
Chy01g01540 | Chy-Chr1:21226903 | Chy02g02104 | Chy-Chr2:25359984 | 4.52E-60 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
17345 | PF00010 | HLH | 1.20E-07 | No_clan | Chy | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Chy01g01540 | - | - | csv:101218718 | 481.1 |