Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g01560 ATGCAAAATTTGGAAAATTCCCTATTTTCTCATACGTGCGTGATTCCATCTGTGATTTCACTCCAGAAGATCTCGAGCCACTGGCTCCCTTTAGAGCAAACTAAAGAATTAGAGATGAATCCTCTGTTTCCAATCAAGGAAGAGTTTCCGGGATCCAGTCCGTCGGATGTCGACGGAGAACGATCGGCTGTTTTGACTCCTCCGATGCCGATGGAGGGTCTTCACGACGCTGGTCCACCGCCGTTTTTGACTAAAACCTTTGAAATCGTTGATGATTTTAATACTGATCATGTAATTTCTTGGAGCTTTAGTGGAACTAGTTTCATCGTTTGGGATCCCCATTGTTTCTCCACTCAATTGCTTCCGAGATTCTTTAAACATAACAACTTTTCTAGCTTCGTTCGTCAACTTAATACTTACGGATTTAGAAAGATAGACCCAGATAGATGGGAGTTTGCAAATGAGGGGTTTATCAGGGGCCAAAAGCATCTTCTTAAAAACATAAAGAGAAGAAGAACAACAAGTTATCATCATCATCAAACCCTTCAATCACAAGGAGCTAGTGGAGTTTGTGTTGAAGTTGGTCAATTTGGAGTTGATGCCGAAATGGATTGTTTGAAACGTGATAAACAAGTGCTGATGATGGAGTTAGTGAAGCTAAGGCAAGAGCAACAGAACACAAGAGCTTATCTTCAAGCAATGGAGCAAAGGCTTAGAGGAACTGAAATTAAGCAAAAACAAATGATGAATTTCTTAGCAAGAGCTATGAAAAACCCATCATTTATTCAGCAGTTAATTCAACAGAAGGAGAAAAGAAAAGAGCTTGAAGAAGCCATAACTAAGAAAAGGAGAAGACCCATTGCACAAGCTGGCCAACATAACTGTGGTGGTGGTAGTGGGAGAAGATTCTTAGGTGAAGGCTCAAACACTATTAAGATCGAACCATTAGAAAATGATGAATATGGATTTGGAATAACAGAGCTAGAAGCACTTGCTTTGGAGATGCAAGGGCTTGGCAAAACAAGATATGAAGATGGGGAGGAAGAAGAAGATGAAGAAGATAATGACAATCTACATCCACCAGAAGATGAAGATAAAGTACTTGATGAAGGGTTTTGGGAAGAATTGTTCAGTGAAAGGTTGGAAGAAGCTAGAAATGAAGATGAAAATGTGAATGTTTTGGCTGATAGGTTGGGCTATTTGGGCTCAAGCCCACCATAG 1221 40.29 MQNLENSLFSHTCVIPSVISLQKISSHWLPLEQTKELEMNPLFPIKEEFPGSSPSDVDGERSAVLTPPMPMEGLHDAGPPPFLTKTFEIVDDFNTDHVISWSFSGTSFIVWDPHCFSTQLLPRFFKHNNFSSFVRQLNTYGFRKIDPDRWEFANEGFIRGQKHLLKNIKRRRTTSYHHHQTLQSQGASGVCVEVGQFGVDAEMDCLKRDKQVLMMELVKLRQEQQNTRAYLQAMEQRLRGTEIKQKQMMNFLARAMKNPSFIQQLIQQKEKRKELEEAITKKRRRPIAQAGQHNCGGGSGRRFLGEGSNTIKIEPLENDEYGFGITELEALALEMQGLGKTRYEDGEEEEDEEDNDNLHPPEDEDKVLDEGFWEELFSERLEEARNEDENVNVLADRLGYLGSSPP* 407
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 21550133 21557058 + Chy1G015600.1 Chy01g01560 218741

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g01560 406 ProSitePatterns HSF-type DNA-binding domain signature. 121 145 IPR000232 GO:0003700|GO:0006355|GO:0043565
Chy01g01560 406 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-6B 49 385 - -
Chy01g01560 406 SUPERFAMILY Winged helix DNA-binding domain 78 171 IPR036390 -
Chy01g01560 406 Pfam HSF-type DNA-binding 82 171 IPR000232 GO:0003700|GO:0006355|GO:0043565
Chy01g01560 406 SMART hsfneu3 78 171 IPR000232 GO:0003700|GO:0006355|GO:0043565
Chy01g01560 406 PRINTS Heat shock factor (HSF) domain signature 133 145 IPR000232 GO:0003700|GO:0006355|GO:0043565
Chy01g01560 406 PRINTS Heat shock factor (HSF) domain signature 120 132 IPR000232 GO:0003700|GO:0006355|GO:0043565
Chy01g01560 406 PRINTS Heat shock factor (HSF) domain signature 82 105 IPR000232 GO:0003700|GO:0006355|GO:0043565
Chy01g01560 406 Coils Coil 265 285 - -
Chy01g01560 406 MobiDBLite consensus disorder prediction 345 359 - -
Chy01g01560 406 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 49 385 IPR027725 -
Chy01g01560 406 Coils Coil 203 237 - -
Chy01g01560 406 MobiDBLite consensus disorder prediction 342 368 - -
Chy01g01560 406 Gene3D - 75 172 IPR036388 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g01560 K09419 HSFF; heat shock transcription factor, other eukaryote - csv:101208010 697.582
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g01560 Chy-Chr1:21550133 Chy05g00425 Chy-Chr5:4550585 3.05E-144 dispersed
Chy03g01653 Chy-Chr3:18349696 Chy01g01560 Chy-Chr1:21550133 2.76E-91 transposed
Chy05g01447 Chy-Chr5:18335836 Chy01g01560 Chy-Chr1:21550133 2.54E-67 transposed
Chy06g01121 Chy-Chr6:9527786 Chy01g01560 Chy-Chr1:21550133 1.22E-09 transposed
Chy10g00217 Chy-Chr10:5495462 Chy01g01560 Chy-Chr1:21550133 1.09E-54 transposed
Chy01g01560 Chy-Chr1:21550133 Chy06g00545 Chy-Chr6:3712008 4.03E-80 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy01g01560 . 79 319 HSF AT4G17750 51.4 1.0e-59 228.0
Chy03g01653 . 43 243 HSF AT4G17750 52.7 1.1e-58 224.6
Chy05g00425 . 26 226 HSF AT4G17750 54.8 1.2e-57 221.1
Chy05g01447 . 58 251 HSF AT4G17750 50.7 9.9e-47 184.9
Chy12g00055 CCT,ECH 13 157 HSF AT4G17750 55.4 9.6e-42 168.3
Chy11g00979 . 12 114 HSF AT4G17750 68.9 5.3e-40 162.5
Chy03g01552 . 20 118 HSF AT4G17750 71.7 5.8e-39 159.1
Chy07g00142 . 20 118 HSF AT4G17750 69.7 2.2e-38 157.1
Chy09g01192 CCT 20 117 HSF AT4G17750 69.4 9.3e-37 151.8
Chy05g00425 . 41 226 HSF AT5G16820 56.7 1.6e-57 220.7
Chy01g01560 . 80 287 HSF AT5G16820 54.2 3.9e-56 216.1
Chy03g01653 . 44 243 HSF AT5G16820 53.6 1.5e-55 214.2
Chy05g01447 . 59 251 HSF AT5G16820 51.0 1.5e-44 177.6
Chy12g00055 CCT,ECH 9 155 HSF AT5G16820 56.7 2.9e-43 173.3
Chy11g00979 . 9 115 HSF AT5G16820 68.2 1.6e-38 157.5
Chy06g02159 . 13 514 HSF AT1G32330 53.4 1.3e-120 430.3
Chy01g01560 . 68 285 HSF AT1G32330 51.8 1.4e-58 224.2
Chy05g00425 . 27 226 HSF AT1G32330 53.6 7.1e-58 221.9
Chy03g01653 . 32 224 HSF AT1G32330 54.6 5.6e-55 212.2
Chy12g00055 CCT,ECH 13 157 HSF AT1G32330 55.9 1.9e-42 170.6
Chy11g00979 . 8 118 HSF AT1G32330 66.1 3.9e-40 162.9
Chy03g01552 . 20 117 HSF AT1G32330 71.4 3.7e-38 156.4
Chy07g00142 . 22 117 HSF AT1G32330 71.9 1.1e-37 154.8
Chy01g01560 . 80 297 HSF AT3G02990 53.2 1.1e-58 224.6
Chy05g00425 . 41 226 HSF AT3G02990 55.8 2.0e-57 220.3
Chy03g01653 . 44 243 HSF AT3G02990 52.2 1.3e-56 217.6
Chy12g00055 CCT,ECH 9 157 HSF AT3G02990 53.0 7.7e-41 165.2
Chy11g00979 . 13 106 HSF AT3G02990 72.3 3.6e-38 156.4
Chy01g01560 . 68 284 HSF AT2G26150 56.0 8.7e-66 247.7
Chy06g02159 . 29 243 HSF AT2G26150 58.8 6.4e-61 231.5
Chy05g01447 . 48 247 HSF AT2G26150 52.5 3.2e-52 202.6
Chy12g00055 CCT,ECH 5 155 HSF AT2G26150 53.3 3.3e-41 166.0
Chy11g00979 . 5 118 HSF AT2G26150 60.5 6.5e-37 151.8
Chy04g01969 . 116 361 HSF AT5G03720 56.8 6.3e-71 265.0
Chy11g00979 . 2 140 HSF AT4G18880 59.7 7.5e-45 178.3
Chy06g00340 . 1 436 HSF AT4G13980 51.0 2.4e-103 372.9
Chy11g00979 . 4 140 HSF AT4G13980 58.4 2.5e-39 160.2
Chy01g01560 . 39 404 HSF AT3G22830 51.2 6.1e-95 344.7
Chy03g01653 . 32 241 HSF AT3G22830 55.2 5.6e-64 241.9
Chy06g02159 . 29 242 HSF AT3G22830 59.3 3.6e-63 239.2
Chy12g00055 CCT,ECH 13 157 HSF AT3G22830 52.7 9.0e-38 154.8
Chy01g01560 . 67 379 HSF AT3G51910 50.6 2.1e-70 262.7
Chy05g00425 . 26 323 HSF AT3G51910 52.7 1.3e-69 260.0
Chy03g01653 . 32 224 HSF AT3G51910 57.0 1.4e-55 213.4
Chy03g01653 . 32 231 HSF AT3G63350 53.2 9.9e-52 200.7
Chy11g00979 . 5 140 HSF AT3G63350 57.2 1.1e-37 154.1
Chy06g00930 CCT 17 190 HSF AT4G36990 50.9 6.1e-41 164.9
Chy09g01192 CCT 16 330 HSF AT4G11660 50.7 4.4e-79 292.0
Chy07g00142 . 16 119 HSF AT4G11660 74.0 1.2e-44 177.6
Chy03g01552 . 16 121 HSF AT4G11660 71.7 1.6e-44 177.2
Chy02g01549 . 26 119 HSF AT4G11660 71.3 1.4e-37 154.1
Chy06g02159 . 31 126 HSF AT4G11660 68.8 7.1e-37 151.8
Chy08g00462 . 37 215 HSF AT2G41690 53.1 1.4e-49 193.4
Chy04g01608 . 12 221 HSF AT2G41690 50.5 4.9e-47 184.9
Chy03g01552 . 19 374 HSF AT1G46264 52.0 1.4e-87 320.1
Chy07g00142 . 19 330 HSF AT1G46264 53.8 1.2e-83 307.0
Chy02g01549 . 18 200 HSF AT1G46264 53.3 1.1e-49 194.1
Chy06g02159 . 31 138 HSF AT1G46264 72.2 2.6e-41 166.4
Chy11g00979 . 5 105 HSF AT1G46264 68.3 2.9e-37 152.9
Chy05g00425 . 32 146 HSF AT1G46264 58.3 1.5e-36 150.6
Chy02g01878 CCT 10 292 HSF AT3G24520 51.3 3.2e-65 245.7
Chy01g01560 . 79 319 HSF AT4G17750 51.4 1.0e-59 228.0
Chy03g01653 . 43 243 HSF AT4G17750 52.7 1.1e-58 224.6
Chy05g00425 . 26 226 HSF AT4G17750 54.8 1.2e-57 221.1
Chy05g01447 . 58 251 HSF AT4G17750 50.7 9.9e-47 184.9
Chy12g00055 CCT,ECH 13 157 HSF AT4G17750 55.4 9.6e-42 168.3
Chy11g00979 . 12 114 HSF AT4G17750 68.9 5.3e-40 162.5
Chy03g01552 . 20 118 HSF AT4G17750 71.7 5.8e-39 159.1
Chy07g00142 . 20 118 HSF AT4G17750 69.7 2.2e-38 157.1
Chy09g01192 CCT 20 117 HSF AT4G17750 69.4 9.3e-37 151.8
Chy05g00425 . 41 226 HSF AT5G16820 56.7 1.6e-57 220.7
Chy01g01560 . 80 287 HSF AT5G16820 54.2 3.9e-56 216.1
Chy03g01653 . 44 243 HSF AT5G16820 53.6 1.5e-55 214.2
Chy05g01447 . 59 251 HSF AT5G16820 51.0 1.5e-44 177.6
Chy12g00055 CCT,ECH 9 155 HSF AT5G16820 56.7 2.9e-43 173.3
Chy11g00979 . 9 115 HSF AT5G16820 68.2 1.6e-38 157.5
Chy06g02159 . 13 514 HSF AT1G32330 53.4 1.3e-120 430.3
Chy01g01560 . 68 285 HSF AT1G32330 51.8 1.4e-58 224.2
Chy05g00425 . 27 226 HSF AT1G32330 53.6 7.1e-58 221.9
Chy03g01653 . 32 224 HSF AT1G32330 54.6 5.6e-55 212.2
Chy12g00055 CCT,ECH 13 157 HSF AT1G32330 55.9 1.9e-42 170.6
Chy11g00979 . 8 118 HSF AT1G32330 66.1 3.9e-40 162.9
Chy03g01552 . 20 117 HSF AT1G32330 71.4 3.7e-38 156.4
Chy07g00142 . 22 117 HSF AT1G32330 71.9 1.1e-37 154.8
Chy01g01560 . 80 297 HSF AT3G02990 53.2 1.1e-58 224.6
Chy05g00425 . 41 226 HSF AT3G02990 55.8 2.0e-57 220.3
Chy03g01653 . 44 243 HSF AT3G02990 52.2 1.3e-56 217.6
Chy12g00055 CCT,ECH 9 157 HSF AT3G02990 53.0 7.7e-41 165.2
Chy11g00979 . 13 106 HSF AT3G02990 72.3 3.6e-38 156.4
Chy01g01560 . 68 284 HSF AT2G26150 56.0 8.7e-66 247.7
Chy06g02159 . 29 243 HSF AT2G26150 58.8 6.4e-61 231.5
Chy05g01447 . 48 247 HSF AT2G26150 52.5 3.2e-52 202.6
Chy12g00055 CCT,ECH 5 155 HSF AT2G26150 53.3 3.3e-41 166.0
Chy11g00979 . 5 118 HSF AT2G26150 60.5 6.5e-37 151.8
Chy04g01969 . 116 361 HSF AT5G03720 56.8 6.3e-71 265.0
Chy11g00979 . 2 140 HSF AT4G18880 59.7 7.5e-45 178.3
Chy06g00340 . 1 436 HSF AT4G13980 51.0 2.4e-103 372.9
Chy11g00979 . 4 140 HSF AT4G13980 58.4 2.5e-39 160.2
Chy01g01560 . 39 404 HSF AT3G22830 51.2 6.1e-95 344.7
Chy03g01653 . 32 241 HSF AT3G22830 55.2 5.6e-64 241.9
Chy06g02159 . 29 242 HSF AT3G22830 59.3 3.6e-63 239.2
Chy12g00055 CCT,ECH 13 157 HSF AT3G22830 52.7 9.0e-38 154.8
Chy01g01560 . 67 379 HSF AT3G51910 50.6 2.1e-70 262.7
Chy05g00425 . 26 323 HSF AT3G51910 52.7 1.3e-69 260.0
Chy03g01653 . 32 224 HSF AT3G51910 57.0 1.4e-55 213.4
Chy03g01653 . 32 231 HSF AT3G63350 53.2 9.9e-52 200.7
Chy11g00979 . 5 140 HSF AT3G63350 57.2 1.1e-37 154.1
Chy06g00930 CCT 17 190 HSF AT4G36990 50.9 6.1e-41 164.9
Chy09g01192 CCT 16 330 HSF AT4G11660 50.7 4.4e-79 292.0
Chy07g00142 . 16 119 HSF AT4G11660 74.0 1.2e-44 177.6
Chy03g01552 . 16 121 HSF AT4G11660 71.7 1.6e-44 177.2
Chy02g01549 . 26 119 HSF AT4G11660 71.3 1.4e-37 154.1
Chy06g02159 . 31 126 HSF AT4G11660 68.8 7.1e-37 151.8
Chy08g00462 . 37 215 HSF AT2G41690 53.1 1.4e-49 193.4
Chy04g01608 . 12 221 HSF AT2G41690 50.5 4.9e-47 184.9
Chy03g01552 . 19 374 HSF AT1G46264 52.0 1.4e-87 320.1
Chy07g00142 . 19 330 HSF AT1G46264 53.8 1.2e-83 307.0
Chy02g01549 . 18 200 HSF AT1G46264 53.3 1.1e-49 194.1
Chy06g02159 . 31 138 HSF AT1G46264 72.2 2.6e-41 166.4
Chy11g00979 . 5 105 HSF AT1G46264 68.3 2.9e-37 152.9
Chy05g00425 . 32 146 HSF AT1G46264 58.3 1.5e-36 150.6
Chy02g01878 CCT 10 292 HSF AT3G24520 51.3 3.2e-65 245.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001412 1 3 2 0 1 2 2 2 2 2 2 2 2 3 2 2 2 4 2 2 2 2 2 2 2 2 2 12 6 0 72
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17347 PF00447 HSF_DNA-bind 8.00E-31 CL0123 Chy TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy01g01560 Chy_Chr01 FPKM 49.646133 63.543354 59.611088 60.780197 22.830698 16.976442 19.63028 130.102509 137.995972 140.792847