Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g01561 ATGTTTGCTGCAACAATGTCCAATTCAACTTCTTTGTCTGAAGAAGCTGCTAGTGTCTCTTCTACCACAAGAATCCACCCTGATTTCACTTCCTTAAACCCTCTCCTCCCATCTTTTTCAGATATTCATCACCCTCCACAAAAACCCAAGAAGAAACGAAGCCTTCCCGGTAACCCAGACCCGGATGCAGATGTGATAGCGCTTTCGCCGAAAACACTACTAGCAACCAATAGGTTTGTGTGTGAGATTTGCAACAAGGGTTTTCAAAGGGATCAAAATTTACAATTACATAGGAGAGGACACAATTTGCCATGGAAATTGAAGCAAAGAAACAACAAAGAAGTGAAGAAAAAAGCCTATGTTTGTCCAGAACCAAGTTGTGTTCATCATCATCCTTCAAGAGCCTTAGGAGATCTGACAGGAATTAAAAAACATTACTGCAGAAAACATGGTGAAAAGAAATGGAAATGTGATAAATGTTCCAAAGTTTATGCTGTTCAATCTGATTGGAAAGCTCACTCCAAAACTTGTGGCACTAGAGAATATAGATGTGATTGTGGAACCCTTTTCTCCAGGAAGGATAGCTTCATAACCCATAGAGCTTTTTGTGATGCACTGGCGGAAGAAAGTGCAAGGCTTTCAGCTAACCAATTGGCCATGGCGGCTGCGGTGGCAGCTGCCGCCGTCTCGGGTGCCACTGACGTCAACATAAACTCGTCCTCGGCCACTGCCGGGGTGCAATCTCTTTTTCCTTATGGTAATCATCATCATCAATACTCGAATCCATCATTGTCATCATTGCCAATGGCATCGCAAACCCACGTGTCTTTAAACCCTTGGGACCATCATCAAAACCCTAATAACCCTAATCACAGCCTCCAAATCATTAAGCCAGAGGATTCAAGTTCTCATCCTTCACATAATTCTCATAATTTTCACCAAATTCCAAATTTGCCCCTCTCCAATTCCGCCTCATCCAACAACAACAACAACAACAACCCTTTTGGTCTAATTCAAGAGCATCAACACCACCACCACCAACAACAAAAGGCACCCTCATCCTCCAGCTCTTCCATGATAACTTCGCCATTTAGGAACCTCCACGTTTCAGTTCACCAAGGATCAAATGCTGCCACGTCAGCACACCTATCAGCCACTGCCCTACTCCAAAAGGCAGCAACAGTTGGCGTTAGCGCTTCAAAATCCGGTAACCATCAGGCCGAGTCAGCGGGCCATATAACTCACTTCAACATGCCCAACATACCCGAGTTCGGCCCACCCAATCACATCGACTCACTGAGTCAACTTGGTACCGACTACGCAACCTGGCAGAAGACTGACCGGCTGACCAGGGACTTTCTCGGTCTGACTGGTGATGGGAACGGCGGTGCTGGTGGTGGATCCGCGGGTGATGGAGTGGTGCAGGTTAGCATGAGCGTGAAGGATATGTTAACGTACGCAGGTGGATTGGAGATGTTTAAGCCTCACAACAACAACAATAACACTAATAACAATAATAATACCAATAATTTTGGATATGGTGAGCCACCTGCCAATGAAGGTTGGGGAGACTGTTGA 1578 45.44 MFAATMSNSTSLSEEAASVSSTTRIHPDFTSLNPLLPSFSDIHHPPQKPKKKRSLPGNPDPDADVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNNKEVKKKAYVCPEPSCVHHHPSRALGDLTGIKKHYCRKHGEKKWKCDKCSKVYAVQSDWKAHSKTCGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARLSANQLAMAAAVAAAAVSGATDVNINSSSATAGVQSLFPYGNHHHQYSNPSLSSLPMASQTHVSLNPWDHHQNPNNPNHSLQIIKPEDSSSHPSHNSHNFHQIPNLPLSNSASSNNNNNNNPFGLIQEHQHHHHQQQKAPSSSSSSMITSPFRNLHVSVHQGSNAATSAHLSATALLQKAATVGVSASKSGNHQAESAGHITHFNMPNIPEFGPPNHIDSLSQLGTDYATWQKTDRLTRDFLGLTGDGNGGAGGGSAGDGVVQVSMSVKDMLTYAGGLEMFKPHNNNNNTNNNNNTNNFGYGEPPANEGWGDC* 526
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 21569039 21572212 + Chy1G015610.1 Chy01g01561 218742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g01561 525 MobiDBLite consensus disorder prediction 276 338 - -
Chy01g01561 525 Pfam Zinc finger, C2H2 type 79 101 IPR013087 -
Chy01g01561 525 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 8 505 - -
Chy01g01561 525 Gene3D Classic Zinc Finger 148 213 - -
Chy01g01561 525 MobiDBLite consensus disorder prediction 36 64 - -
Chy01g01561 525 ProSitePatterns Zinc finger C2H2 type domain signature. 81 101 IPR013087 -
Chy01g01561 525 SMART c2h2final6 155 175 IPR013087 -
Chy01g01561 525 SMART c2h2final6 120 150 IPR013087 -
Chy01g01561 525 SMART c2h2final6 79 101 IPR013087 -
Chy01g01561 525 MobiDBLite consensus disorder prediction 496 514 - -
Chy01g01561 525 PANTHER PROTEIN INDETERMINATE-DOMAIN 12 8 505 - -
Chy01g01561 525 Gene3D Classic Zinc Finger 58 127 - -
Chy01g01561 525 SUPERFAMILY beta-beta-alpha zinc fingers 78 175 IPR036236 -
Chy01g01561 525 ProSiteProfiles Zinc finger C2H2 type domain profile. 79 101 IPR013087 -
Chy01g01561 525 MobiDBLite consensus disorder prediction 276 361 - -
Chy01g01561 525 MobiDBLite consensus disorder prediction 496 525 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g01561 Chy-Chr1:21569039 Chy02g00663 Chy-Chr2:4027016 2.51E-110 dispersed
Chy01g01561 Chy-Chr1:21569039 Chy11g00664 Chy-Chr11:8175368 5.40E-113 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17348 PF00096 zf-C2H2 0.0053 CL0361 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g01561 K25870 - csv:101208253 915.99