Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g01661 ATGGGAATCTCAAACATTACAAGTGAAAATCATCATGCAAACTTGTCTTCAGCCAATAGTACAATGGAAGATCAGTTAGAAGAAGTTGAACAGAACAACAATACTAACCACCAACTTCTTAATCACTTCCTCTATGGCTCTTCCAATGGAGATCAAACCAATTCCCATGGCTCATCTAATTCCCTTGATCACCACCAACAAAGAGTTAAGAAGAAGCGTAATCTTCCCGGCACTCCAGATCCAAATGCTGAAGTTATTGTTTTATCACCAACAACCCTAATGGCTAGAAATAGGTTTGTGTGTGAGATTTGCAACAAGGGGTTTCAAAGAGATCAAAACCTTCAATTGCATAGGAGAGGCCACAACCTTCCATGGAAACTCCGGCAAAGAAGTGGTGCCGAAGTGAAGAAAAGGGTTTACGTATGCCCCGAACCGACATGTGTTCATCACAACCCAGCTCGAGCTCTCGGCGATCTTACCGGAATTAAGAAGCATTTTAGTAGAAAGCATGGGGAAAAGAAATGGAAGTGTGAGAAATGTTCCAAGAAATATGCAGTTCAGTCTGATTTGAAAGCTCATCAAAAGACTTGTGGCACTAGGGAATACAAATGTGATTGTGGAACTCTCTTTTCCAGAAGGGACAGCTTCATCACCCACAGAGCCTTTTGCAATGCATTAACAGAAGAAAGCAACAAACTAAAGCAAGGAATTCTCAACAACAATAACAATAACATAGAAGCAATCTCAATTATCTCCACTCCAAAGCTTTCTCATTTTGGCACGTCAATCATGCCTGAATTCAACCCTTACGATCAAAAAAACCCTTTCAAATCCCTCCCCCAAGAACTCAATAACTCGACCCCCACCACCACCACAGGTGCACCCGGAGGGTTGTTCATGGTCGGACCCCGAAGCAACAACAATTCTTCCTCTTTCTCAAGCCTTAAGCTCAGCTCCACCACCTCTTCGCGCTTTAGTTGTCTTTATGATAGTAAAAATGGCTGCCTTCAGGATACCGGGTCAGCAACAGCCACATTGGTTACTTCGGCCACGGCACTGTTGCAAAAAGCTGCACAAATAGGAGCAACTACAAGCTCTGTTGGTGTTTTGAAGTCTCCATTGATGGAAATGCCACATTCTGATCAACCAGTAGACATGGTAGGAATGAACAATATGGGAATGTATGGACATATGATGATGATGAAAGAACAAGATCATAACTGTAGTACCAACAGCTCGAGTTTCGTTGTCCCGGAAAAGGGCCAGTGGCGACCAATATCGAGATTTCCAGGTGGCGGTAGTGGAACAGGGGAAGAGAATCATCAAATGATGACTTTAGATTTGTTGGGAGAAAGAGGGTGGAGGTTGAGACATTTGCAAGGAGATCATGAAAGTAGCCACCATTATCAGGGCCAGCAAGAGATGGTGCCAATTATGAAGCATTTTGATCAGATGCAAAACTTTCATGGGGATTCTTCAAATGTTGACAAATCCATATTTGAGTTTTGA 1509 42.81 MGISNITSENHHANLSSANSTMEDQLEEVEQNNNTNHQLLNHFLYGSSNGDQTNSHGSSNSLDHHQQRVKKKRNLPGTPDPNAEVIVLSPTTLMARNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRSGAEVKKRVYVCPEPTCVHHNPARALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDLKAHQKTCGTREYKCDCGTLFSRRDSFITHRAFCNALTEESNKLKQGILNNNNNNIEAISIISTPKLSHFGTSIMPEFNPYDQKNPFKSLPQELNNSTPTTTTGAPGGLFMVGPRSNNNSSSFSSLKLSSTTSSRFSCLYDSKNGCLQDTGSATATLVTSATALLQKAAQIGATTSSVGVLKSPLMEMPHSDQPVDMVGMNNMGMYGHMMMMKEQDHNCSTNSSSFVVPEKGQWRPISRFPGGGSGTGEENHQMMTLDLLGERGWRLRHLQGDHESSHHYQGQQEMVPIMKHFDQMQNFHGDSSNVDKSIFEF* 503
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 22549641 22553782 - Chy1G016610.1 Chy01g01661 218842
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g01661 502 MobiDBLite consensus disorder prediction 43 83 - -
Chy01g01661 502 ProSiteProfiles Zinc finger C2H2 type domain profile. 99 121 IPR013087 -
Chy01g01661 502 SUPERFAMILY beta-beta-alpha zinc fingers 98 196 IPR036236 -
Chy01g01661 502 ProSiteProfiles Zinc finger C2H2 type domain profile. 175 203 IPR013087 -
Chy01g01661 502 Coils Coil 12 32 - -
Chy01g01661 502 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 48 403 - -
Chy01g01661 502 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 48 403 - -
Chy01g01661 502 ProSitePatterns Zinc finger C2H2 type domain signature. 101 121 IPR013087 -
Chy01g01661 502 MobiDBLite consensus disorder prediction 1 31 - -
Chy01g01661 502 MobiDBLite consensus disorder prediction 43 62 - -
Chy01g01661 502 SMART c2h2final6 175 195 IPR013087 -
Chy01g01661 502 SMART c2h2final6 99 121 IPR013087 -
Chy01g01661 502 SMART c2h2final6 140 170 IPR013087 -
Chy01g01661 502 Gene3D Classic Zinc Finger 77 144 - -
Chy01g01661 502 Gene3D Classic Zinc Finger 154 233 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g01661 Chy-Chr1:22549641 Chy08g01019 Chy-Chr8:17381947 2.35E-109 dispersed
Chy12g00769 Chy-Chr12:11794489 Chy01g01661 Chy-Chr1:22549641 1.59E-23 dispersed
Chy01g01661 Chy-Chr1:22549641 Chy11g00664 Chy-Chr11:8175368 4.19E-111 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17351 None None None None Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g01661 - - csv:101205011 882.478