Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g01662 ATGGATGAAAACACAGGCATGCCAGAGAGATCCATAGAATTTAAGTACGATTTCACCGGCGGTGGCAGTAGCGGAGTTGGTGGTAGCACAGGTGGTTCGAGTGAGGAAGCTGGTAACGGCGTTGGCGGGGTGGTAAAAGAGCAAGATCGGTTACTTCCAATAGCAAATGTGGGGAGGATAATGAAGCAAATTCTACCTCCAAATGCCAAAATCTCAAAAGAAGCTAAAGAAACTATGCAAGAATGTGTGTCGGAGTTCATCAGTTTCGTGACGGGGGAGGCGTCAGATAAGTGCCATAAGGAGAAGAGGAAGACTGTTAATGGTGATGATATTTGCTGTGCTTTGGCTACACTTGGATTTGATGATTATGCTGAGCCTTTGAGAAGGTATTTGGATAAGCTCAAATGGGGAAATGGGGGAAATGGAGAAATGTGA 435 45.29 MDENTGMPERSIEFKYDFTGGGSSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLDKLKWGNGGNGEM* 145
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 22570705 22571390 + Chy1G016620.1 Chy01g01662 218843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g01662 144 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-5 34 136 - -
Chy01g01662 144 PRINTS CCAAT-binding transcription factor subunit A signature 117 135 - -
Chy01g01662 144 PRINTS CCAAT-binding transcription factor subunit A signature 79 97 - -
Chy01g01662 144 PRINTS CCAAT-binding transcription factor subunit A signature 98 116 - -
Chy01g01662 144 ProSitePatterns NF-YB/HAP3 subunit signature. 82 98 IPR003956 GO:0005634|GO:0006355|GO:0043565
Chy01g01662 144 Gene3D Histone, subunit A 43 140 IPR009072 GO:0046982
Chy01g01662 144 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 51 115 IPR003958 -
Chy01g01662 144 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 34 136 IPR027113 GO:0001228|GO:0006355|GO:0016602
Chy01g01662 144 MobiDBLite consensus disorder prediction 15 43 - -
Chy01g01662 144 SUPERFAMILY Histone-fold 48 136 IPR009072 GO:0046982
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g01662 Chy-Chr1:22570705 Chy06g01902 Chy-Chr6:22863372 1.78E-46 dispersed
Chy01g01662 Chy-Chr1:22570705 Chy04g02095 Chy-Chr4:26324861 9.45E-42 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17352 PF00808 CBFD_NFYB_HMF 5.50E-27 CL0012 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g01662 K08065 - csv:101204763 245.743