Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g01662 ATGGATGAAAACACAGGCATGCCAGAGAGATCCATAGAATTTAAGTACGATTTCACCGGCGGTGGCAGTAGCGGAGTTGGTGGTAGCACAGGTGGTTCGAGTGAGGAAGCTGGTAACGGCGTTGGCGGGGTGGTAAAAGAGCAAGATCGGTTACTTCCAATAGCAAATGTGGGGAGGATAATGAAGCAAATTCTACCTCCAAATGCCAAAATCTCAAAAGAAGCTAAAGAAACTATGCAAGAATGTGTGTCGGAGTTCATCAGTTTCGTGACGGGGGAGGCGTCAGATAAGTGCCATAAGGAGAAGAGGAAGACTGTTAATGGTGATGATATTTGCTGTGCTTTGGCTACACTTGGATTTGATGATTATGCTGAGCCTTTGAGAAGGTATTTGGATAAGCTCAAATGGGGAAATGGGGGAAATGGAGAAATGTGA 435 45.29 MDENTGMPERSIEFKYDFTGGGSSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLDKLKWGNGGNGEM* 145
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 22570705 22571390 + Chy1G016620.1 Chy01g01662 218843

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g01662 144 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-5 34 136 - -
Chy01g01662 144 PRINTS CCAAT-binding transcription factor subunit A signature 117 135 - -
Chy01g01662 144 PRINTS CCAAT-binding transcription factor subunit A signature 79 97 - -
Chy01g01662 144 PRINTS CCAAT-binding transcription factor subunit A signature 98 116 - -
Chy01g01662 144 ProSitePatterns NF-YB/HAP3 subunit signature. 82 98 IPR003956 GO:0005634|GO:0006355|GO:0043565
Chy01g01662 144 Gene3D Histone, subunit A 43 140 IPR009072 GO:0046982
Chy01g01662 144 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 51 115 IPR003958 -
Chy01g01662 144 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 34 136 IPR027113 GO:0001228|GO:0006355|GO:0016602
Chy01g01662 144 MobiDBLite consensus disorder prediction 15 43 - -
Chy01g01662 144 SUPERFAMILY Histone-fold 48 136 IPR009072 GO:0046982
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g01662 K08065 NFYB, HAP3; nuclear transcription Y subunit beta - csv:101204763 245.743
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g01662 Chy-Chr1:22570705 Chy06g01902 Chy-Chr6:22863372 1.78E-46 dispersed
Chy01g01662 Chy-Chr1:22570705 Chy04g02095 Chy-Chr4:26324861 9.45E-42 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi7g243 Blo05g00317 . Bda04g00601 . . Bpe06g00510 . . . Cmo17g01087 . . . . . . . . . . . . . . Cla09g00572 Cam09g0608 Cec09g0592 Cco09g0586 Clacu09g0607 . Cre09g0581 Cone17ag0499 Cone20ag0927 . . Lsi02g02373 . . Cme01g02349 . . . . . . . . . . . . Cma17g01111 . . . Cpe12g00955 . . . . . . . . . . . . . . . . Chy01g01662 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy06g01888 . 34 174 CCAAT-HAP3 Transcription Factor Family AT5G47670 68.3 6.5e-49 191.0
Chy06g01888 . 58 196 CCAAT-HAP3 Transcription Factor Family AT1G21970 67.3 1.3e-49 193.4
Chy07g01303 . 11 138 CCAAT-HAP3 Transcription Factor Family AT1G21970 53.8 9.0e-38 154.1
Chy06g01902 . 1 120 CCAAT-HAP3 Transcription Factor Family AT4G14540 80.2 3.5e-49 191.4
Chy07g01303 . 29 135 CCAAT-HAP3 Transcription Factor Family AT4G14540 86.1 7.2e-47 183.7
Chy04g02095 . 980 1082 CCAAT-HAP3 Transcription Factor Family AT4G14540 82.5 3.9e-45 177.9
Chy10g00622 . 25 159 CCAAT-HAP3 Transcription Factor Family AT4G14540 59.3 9.4e-39 156.8
Chy04g02095 . 959 1073 CCAAT-HAP3 Transcription Factor Family AT2G38880 79.1 2.8e-48 188.3
Chy10g00622 . 1 144 CCAAT-HAP3 Transcription Factor Family AT2G38880 64.6 4.1e-44 174.5
Chy06g01902 . 1 110 CCAAT-HAP3 Transcription Factor Family AT2G38880 71.2 8.7e-42 166.8
Chy07g01303 . 16 122 CCAAT-HAP3 Transcription Factor Family AT2G38880 73.8 2.5e-41 165.2
Chy01g01662 . 44 139 CCAAT-HAP3 Transcription Factor Family AT2G47810 81.3 2.9e-40 161.8
Chy06g01902 . 19 114 CCAAT-HAP3 Transcription Factor Family AT2G47810 76.0 1.4e-39 159.5
Chy07g01303 . 32 140 CCAAT-HAP3 Transcription Factor Family AT2G47810 67.9 6.1e-38 154.1
Chy04g02095 . 959 1132 CCAAT-HAP3 Transcription Factor Family AT2G37060 74.6 1.2e-63 239.6
Chy10g00622 . 7 193 CCAAT-HAP3 Transcription Factor Family AT2G37060 61.3 5.7e-50 194.1
Chy07g01303 . 31 136 CCAAT-HAP3 Transcription Factor Family AT2G37060 73.6 4.9e-41 164.5
Chy06g01902 . 6 113 CCAAT-HAP3 Transcription Factor Family AT2G37060 72.5 6.3e-41 164.1
Chy07g01303 . 19 134 CCAAT-HAP3 Transcription Factor Family AT2G13570 74.4 1.2e-44 176.8
Chy04g02095 . 965 1083 CCAAT-HAP3 Transcription Factor Family AT2G13570 68.5 5.8e-44 174.5
Chy06g01902 . 19 114 CCAAT-HAP3 Transcription Factor Family AT2G13570 80.2 2.1e-41 166.0
Chy06g01902 . 1 117 CCAAT-HAP3 Transcription Factor Family AT5G47640 81.5 4.8e-50 194.5
Chy07g01303 . 27 134 CCAAT-HAP3 Transcription Factor Family AT5G47640 78.7 6.1e-45 177.6
Chy04g02095 . 969 1087 CCAAT-HAP3 Transcription Factor Family AT5G47640 70.6 5.1e-44 174.5
Chy10g00622 . 14 164 CCAAT-HAP3 Transcription Factor Family AT5G47640 54.8 1.0e-39 160.2
Chy04g02095 . 970 1132 CCAAT-HAP3 Transcription Factor Family AT3G53340 74.4 1.5e-61 232.6
Chy10g00622 . 12 192 CCAAT-HAP3 Transcription Factor Family AT3G53340 61.7 7.6e-50 193.7
Chy06g01902 . 6 113 CCAAT-HAP3 Transcription Factor Family AT3G53340 73.4 1.3e-41 166.4
Chy07g01303 . 20 124 CCAAT-HAP3 Transcription Factor Family AT3G53340 74.3 6.4e-41 164.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005137 2 0 1 1 2 1 0 1 1 1 1 1 1 1 1 1 1 4 1 1 1 2 1 1 1 1 2 2 2 5 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17352 PF00808 CBFD_NFYB_HMF 5.50E-27 CL0012 Chy TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy01g01662 Chy_Chr01 FPKM 3.764327 3.913649 1.981667 2.088502 6.230999 5.961637 6.437396 0.690069 0.46912 0.546132