Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Chy01g01662 | ATGGATGAAAACACAGGCATGCCAGAGAGATCCATAGAATTTAAGTACGATTTCACCGGCGGTGGCAGTAGCGGAGTTGGTGGTAGCACAGGTGGTTCGAGTGAGGAAGCTGGTAACGGCGTTGGCGGGGTGGTAAAAGAGCAAGATCGGTTACTTCCAATAGCAAATGTGGGGAGGATAATGAAGCAAATTCTACCTCCAAATGCCAAAATCTCAAAAGAAGCTAAAGAAACTATGCAAGAATGTGTGTCGGAGTTCATCAGTTTCGTGACGGGGGAGGCGTCAGATAAGTGCCATAAGGAGAAGAGGAAGACTGTTAATGGTGATGATATTTGCTGTGCTTTGGCTACACTTGGATTTGATGATTATGCTGAGCCTTTGAGAAGGTATTTGGATAAGCTCAAATGGGGAAATGGGGGAAATGGAGAAATGTGA | 435 | 45.29 | MDENTGMPERSIEFKYDFTGGGSSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLDKLKWGNGGNGEM* | 145 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 22570705 | 22571390 | + | Chy1G016620.1 | Chy01g01662 | 218843 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Chy01g01662 | 144 | PANTHER | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-5 | 34 | 136 | - | - | |
Chy01g01662 | 144 | PRINTS | CCAAT-binding transcription factor subunit A signature | 117 | 135 | - | - | |
Chy01g01662 | 144 | PRINTS | CCAAT-binding transcription factor subunit A signature | 79 | 97 | - | - | |
Chy01g01662 | 144 | PRINTS | CCAAT-binding transcription factor subunit A signature | 98 | 116 | - | - | |
Chy01g01662 | 144 | ProSitePatterns | NF-YB/HAP3 subunit signature. | 82 | 98 | IPR003956 | GO:0005634|GO:0006355|GO:0043565 | |
Chy01g01662 | 144 | Gene3D | Histone, subunit A | 43 | 140 | IPR009072 | GO:0046982 | |
Chy01g01662 | 144 | Pfam | Histone-like transcription factor (CBF/NF-Y) and archaeal histone | 51 | 115 | IPR003958 | - | |
Chy01g01662 | 144 | PANTHER | CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED | 34 | 136 | IPR027113 | GO:0001228|GO:0006355|GO:0016602 | |
Chy01g01662 | 144 | MobiDBLite | consensus disorder prediction | 15 | 43 | - | - | |
Chy01g01662 | 144 | SUPERFAMILY | Histone-fold | 48 | 136 | IPR009072 | GO:0046982 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Chy01g01662 | Chy-Chr1:22570705 | Chy06g01902 | Chy-Chr6:22863372 | 1.78E-46 | dispersed | |
Chy01g01662 | Chy-Chr1:22570705 | Chy04g02095 | Chy-Chr4:26324861 | 9.45E-42 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
17352 | PF00808 | CBFD_NFYB_HMF | 5.50E-27 | CL0012 | Chy | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Chy01g01662 | K08065 | - | csv:101204763 | 245.743 |