Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g01719 ATGTACCGCCTGAAAAACAGAGCTCAAATCTCTTCAAATCCCACCTCCATTTCCACCATTTCCCCTTTCTTCTTCATTTTCTTCCTCTTCTCCTTCAAACCCATTTCTTCAAATCCCCAAATCCACCAAACTGCTCGATCCCTTTGCAATGGCACTCTCTTCCCAGACCTCTGTTTCTCTAAACTCTCTTCTTTTCCCCAATTGGCTTCCCTGTCCCCGGAAAAGCTCGCCAGCAGTGCCCTCAACTTCACTTCCCGCGAGGTCCTCCTTGCCTACACCAATTGCACCAACCTCAAGACTCACCTTTACAGTGGCCTAAATCCCACCGACCGCCACGCCCTCGACGACTGTCTTGAGCTTCTCGACGGCAGCATTGCAGAGCTCAAAGCTTCGATCTTCGATCTGGCGCCATCGCAATCCCCAGCTCGTCACTCCCACGATTTGTTGACATTGGTCAGCGCCGCCATGACCAACCACCGAACTTGTGTTGATGGGTTTTATAATAGTTCGGGAACTGTGAGGAGCAGGGTGGAGCTTTATTTGGGGAAAATCGGACAGCATTTAAGTATTGATTTGGCGATGTTGAAGAAAATCCCTGGAGTTAATAGGGCTACGGGGGTAGATCAGGAGGTGTTGCCGGAGTATGGGGCAGTGAAAGGTGGGTTTCCGAAGTGGGTTTCGGTTAAGGATCGGAGATTGTTGCAGGCAGCAGTGAATGAGACGAAGTTCAATTTGGTAGTGGCGAAGGATGGCTCCGGGAATTTCACGACTGTGAGCGAGGCCGTGGCCGCCGCTCCGAATTCGAGCACCACCAGGTTTGTAATATACATAAAAGCAGGGGCGTATTTTGAGAACGTGGAAATAGGAAGGGCAAAGTCAAACTTGATGTTCGTCGGTGACGGCATCGGAAAGACGCTGATAAAGGCCGACCGGAATGTCGTCGACGGCTGGACTACTTTCCGATCAGCCACCGTTGCGGTGGTTGGCATCGGGTTCATAGCAAAAGGCATAACATTTGAGAATTATGCGGGTCCAAGCAAGCACCAAGCTGTAGCCTTACGAAGTAACTCTGACTTCTCAGCATTTTACCAGTGTAGCTTCATCGGCTATCAAGACACTCTCTACGTTCACTCCCTCCGTCAATTCTACCGCGAATGCGATATCTATGGTACCATCGACTTCATTTTTGGCAACGCTGCCGTTGTTTTACAAAACTGCAACCTTTATGCTCGGAAACCCAATTCAAATCAACGCAACATATTCACTGCTCAAGGTCGCGAAGACCCCAATCAAAACACTGGAATCTCAATCCTCAATTGTAAGGTTGAAGCTGCCTCTGACCTAATCCCAAATCTTTCCTCGTTTAGAACTTACTTGGGTCGTCCTTGGAAGTTGCACTCGAGGACAGTTTTTCTCCGATCATTTATCGGGCAGTTGGTTGAACCGGTTGGATGGCTTGAGTGGAATGGAACATTTGCATTGGATACTTTGTACTATGGGGAGTATTTAAATAGGGGGCCTGGTTCGAATACAACCAGGCGAGTTACTTGGCCAGGTTATCGAGTTATTACTAACGCAACAGAAGCGAGTCAGTTTACGGTTGAGGGATTTATACAAGGTAGCTCGTGGTTGAACTCGACTGAGATTCCTTTCTTCTCCGGTTTGACTCCACCTTAG 1677 48.66 MYRLKNRAQISSNPTSISTISPFFFIFFLFSFKPISSNPQIHQTARSLCNGTLFPDLCFSKLSSFPQLASLSPEKLASSALNFTSREVLLAYTNCTNLKTHLYSGLNPTDRHALDDCLELLDGSIAELKASIFDLAPSQSPARHSHDLLTLVSAAMTNHRTCVDGFYNSSGTVRSRVELYLGKIGQHLSIDLAMLKKIPGVNRATGVDQEVLPEYGAVKGGFPKWVSVKDRRLLQAAVNETKFNLVVAKDGSGNFTTVSEAVAAAPNSSTTRFVIYIKAGAYFENVEIGRAKSNLMFVGDGIGKTLIKADRNVVDGWTTFRSATVAVVGIGFIAKGITFENYAGPSKHQAVALRSNSDFSAFYQCSFIGYQDTLYVHSLRQFYRECDIYGTIDFIFGNAAVVLQNCNLYARKPNSNQRNIFTAQGREDPNQNTGISILNCKVEAASDLIPNLSSFRTYLGRPWKLHSRTVFLRSFIGQLVEPVGWLEWNGTFALDTLYYGEYLNRGPGSNTTRRVTWPGYRVITNATEASQFTVEGFIQGSSWLNSTEIPFFSGLTPP* 559
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 22981477 22983896 - Chy1G017190.1 Chy01g01719 218900
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g01719 558 Gene3D - 238 555 IPR012334 -
Chy01g01719 558 SUPERFAMILY Pectin lyase-like 242 554 IPR011050 -
Chy01g01719 558 TIGRFAM PME_inhib: pectinesterase inhibitor domain 23 197 IPR006501 GO:0004857
Chy01g01719 558 ProSitePatterns Pectinesterase signature 2. 388 397 IPR033131 -
Chy01g01719 558 Gene3D Invertase/pectin methylesterase inhibitor family protein 44 200 IPR035513 -
Chy01g01719 558 PANTHER PECTINESTERASE 42 552 - -
Chy01g01719 558 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 46 199 IPR035513 -
Chy01g01719 558 Pfam Pectinesterase 244 540 IPR000070 GO:0030599|GO:0042545
Chy01g01719 558 SMART PMEI_2 40 194 IPR006501 GO:0004857
Chy01g01719 558 CDD PMEI-like_3 47 200 - -
Chy01g01719 558 Pfam Plant invertase/pectin methylesterase inhibitor 46 177 IPR006501 GO:0004857
Chy01g01719 558 PANTHER PECTINESTERASE 42 552 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g01719 Chy-Chr1:22981477 Chy06g01208 Chy-Chr6:10749051 1.04E-169 dispersed
Chy08g01045 Chy-Chr8:17543352 Chy01g01719 Chy-Chr1:22981477 1.19E-140 dispersed
Chy10g01212 Chy-Chr10:16839372 Chy01g01719 Chy-Chr1:22981477 1.23E-145 dispersed
Chy01g01719 Chy-Chr1:22981477 Chy01g01721 Chy-Chr1:23002743 2.74E-98 proximal
Chy01g01719 Chy-Chr1:22981477 Chy01g01720 Chy-Chr1:23000741 3.28E-26 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g01719 K01051 - csv:101205557 1059.28