Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g01720 ATGGCTGCCGGAACCACCGCCACCGCCGCCGCATTCTACGTCCTTCTAATCCTCATTTCACTTTACATCACCACTTCCGCCTCCCCCACCGGTTCGGTTTGTAGCTCAACTCCAGACCCATCGTATTGCAAATCGGCCCTCCCGAACCAAACCGGAAATGTGTACTCGTACGGGCGGTCGTCATTCAGAAAATCACTGTCGTCGTCACAGAAGTTCCTCCGGCTAGTGGAGAAGCACCTCCGGTCCCGATCGTCGCTGACGGTGCCGGCGGCGAGGGCGTTGGAGGACTGCCTGCTACTGGCGGGACTGAACATCGATTACTTGAAGACGTCGTTCCAGACGGTGAACGCGACGAGCAGAGCATTGACGGAGATGAAGGCGGACGATGTGCAGAGTCTGCTGAGTGCGATATTGACGAATCAACAGACTTGTTTGGACGGAATTAAGGCGACGGCGGGTTCTTGGTCGCTTAAAAATGGCCTTTCTCAACCACTTGCTTCTGACACCAAGCTGTACTCTCTGTCTTTGGCCTTCTTCACAAAAGGTTGGGTTCCGAAGAAGAAGAAAAGGCCGACATGGAAAGTCGCGGGAAGACAAGGCGGGTTTAGAAACGGACGAATGTCACTCAAAATGTCCAGCAGAACCCAAGCCATTTACGAGAAGGCGACCCGCCGGAATCTGCTGCAGACTGACGACGGCGACGACGACGATCAGATTAAGGTCAGGGACATCGTCGTTGTCAGTCAAGACGGCAGCGGAAATTTCACAACCATCAACGAGGCCATTGCGGCAGCGCCCAACAACTCTGCTCCTACGGACGGGTATTTCTTGATCTTCGTGTCCGAGGGAGTTTATGAAGAGTATGTGTTAGTTGCGAAGAACAAGAGATACTTGATGATGATCGGAGATGGCATTAATCAGACCATCGTCACCGGTAATCGAAGCGTCGTTGACGGCTGGACCACTTTCAATTCCGCCACTTTTGGTAACTTCCTCCACCTTTTAGATATTGCTGAAAGAAGAGATGGATAA 1032 52.52 MAAGTTATAAAFYVLLILISLYITTSASPTGSVCSSTPDPSYCKSALPNQTGNVYSYGRSSFRKSLSSSQKFLRLVEKHLRSRSSLTVPAARALEDCLLLAGLNIDYLKTSFQTVNATSRALTEMKADDVQSLLSAILTNQQTCLDGIKATAGSWSLKNGLSQPLASDTKLYSLSLAFFTKGWVPKKKKRPTWKVAGRQGGFRNGRMSLKMSSRTQAIYEKATRRNLLQTDDGDDDDQIKVRDIVVVSQDGSGNFTTINEAIAAAPNNSAPTDGYFLIFVSEGVYEEYVLVAKNKRYLMMIGDGINQTIVTGNRSVVDGWTTFNSATFGNFLHLLDIAERRDG* 344
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
1 23000741 23002700 + Chy1G017200.1 Chy01g01720 218901
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Chy01g01720 343 Gene3D - 238 333 IPR012334 -
Chy01g01720 343 Gene3D Invertase/pectin methylesterase inhibitor family protein 30 181 IPR035513 -
Chy01g01720 343 PANTHER PECTINESTERASE 25 329 - -
Chy01g01720 343 Pfam Pectinesterase 245 329 IPR000070 GO:0030599|GO:0042545
Chy01g01720 343 Pfam Plant invertase/pectin methylesterase inhibitor 32 177 IPR006501 GO:0004857
Chy01g01720 343 SMART PMEI_2 24 178 IPR006501 GO:0004857
Chy01g01720 343 PANTHER PECTINESTERASE 25 329 - -
Chy01g01720 343 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 32 181 IPR035513 -
Chy01g01720 343 CDD PMEI-like_3 32 183 - -
Chy01g01720 343 SUPERFAMILY Pectin lyase-like 243 328 IPR011050 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g01720 Chy-Chr1:23000741 Chy04g00215 Chy-Chr4:1957479 3.13E-97 dispersed
Chy01g01719 Chy-Chr1:22981477 Chy01g01720 Chy-Chr1:23000741 3.28E-26 tandem
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g01720 K01051 - csv:101205321 598.971