Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Chy01g01720 | ATGGCTGCCGGAACCACCGCCACCGCCGCCGCATTCTACGTCCTTCTAATCCTCATTTCACTTTACATCACCACTTCCGCCTCCCCCACCGGTTCGGTTTGTAGCTCAACTCCAGACCCATCGTATTGCAAATCGGCCCTCCCGAACCAAACCGGAAATGTGTACTCGTACGGGCGGTCGTCATTCAGAAAATCACTGTCGTCGTCACAGAAGTTCCTCCGGCTAGTGGAGAAGCACCTCCGGTCCCGATCGTCGCTGACGGTGCCGGCGGCGAGGGCGTTGGAGGACTGCCTGCTACTGGCGGGACTGAACATCGATTACTTGAAGACGTCGTTCCAGACGGTGAACGCGACGAGCAGAGCATTGACGGAGATGAAGGCGGACGATGTGCAGAGTCTGCTGAGTGCGATATTGACGAATCAACAGACTTGTTTGGACGGAATTAAGGCGACGGCGGGTTCTTGGTCGCTTAAAAATGGCCTTTCTCAACCACTTGCTTCTGACACCAAGCTGTACTCTCTGTCTTTGGCCTTCTTCACAAAAGGTTGGGTTCCGAAGAAGAAGAAAAGGCCGACATGGAAAGTCGCGGGAAGACAAGGCGGGTTTAGAAACGGACGAATGTCACTCAAAATGTCCAGCAGAACCCAAGCCATTTACGAGAAGGCGACCCGCCGGAATCTGCTGCAGACTGACGACGGCGACGACGACGATCAGATTAAGGTCAGGGACATCGTCGTTGTCAGTCAAGACGGCAGCGGAAATTTCACAACCATCAACGAGGCCATTGCGGCAGCGCCCAACAACTCTGCTCCTACGGACGGGTATTTCTTGATCTTCGTGTCCGAGGGAGTTTATGAAGAGTATGTGTTAGTTGCGAAGAACAAGAGATACTTGATGATGATCGGAGATGGCATTAATCAGACCATCGTCACCGGTAATCGAAGCGTCGTTGACGGCTGGACCACTTTCAATTCCGCCACTTTTGGTAACTTCCTCCACCTTTTAGATATTGCTGAAAGAAGAGATGGATAA | 1032 | 52.52 | MAAGTTATAAAFYVLLILISLYITTSASPTGSVCSSTPDPSYCKSALPNQTGNVYSYGRSSFRKSLSSSQKFLRLVEKHLRSRSSLTVPAARALEDCLLLAGLNIDYLKTSFQTVNATSRALTEMKADDVQSLLSAILTNQQTCLDGIKATAGSWSLKNGLSQPLASDTKLYSLSLAFFTKGWVPKKKKRPTWKVAGRQGGFRNGRMSLKMSSRTQAIYEKATRRNLLQTDDGDDDDQIKVRDIVVVSQDGSGNFTTINEAIAAAPNNSAPTDGYFLIFVSEGVYEEYVLVAKNKRYLMMIGDGINQTIVTGNRSVVDGWTTFNSATFGNFLHLLDIAERRDG* | 344 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 23000741 | 23002700 | + | Chy1G017200.1 | Chy01g01720 | 218901 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Chy01g01720 | 343 | Gene3D | - | 238 | 333 | IPR012334 | - | |
| Chy01g01720 | 343 | Gene3D | Invertase/pectin methylesterase inhibitor family protein | 30 | 181 | IPR035513 | - | |
| Chy01g01720 | 343 | PANTHER | PECTINESTERASE | 25 | 329 | - | - | |
| Chy01g01720 | 343 | Pfam | Pectinesterase | 245 | 329 | IPR000070 | GO:0030599|GO:0042545 | |
| Chy01g01720 | 343 | Pfam | Plant invertase/pectin methylesterase inhibitor | 32 | 177 | IPR006501 | GO:0004857 | |
| Chy01g01720 | 343 | SMART | PMEI_2 | 24 | 178 | IPR006501 | GO:0004857 | |
| Chy01g01720 | 343 | PANTHER | PECTINESTERASE | 25 | 329 | - | - | |
| Chy01g01720 | 343 | SUPERFAMILY | Plant invertase/pectin methylesterase inhibitor | 32 | 181 | IPR035513 | - | |
| Chy01g01720 | 343 | CDD | PMEI-like_3 | 32 | 183 | - | - | |
| Chy01g01720 | 343 | SUPERFAMILY | Pectin lyase-like | 243 | 328 | IPR011050 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Chy01g01720 | Chy-Chr1:23000741 | Chy04g00215 | Chy-Chr4:1957479 | 3.13E-97 | dispersed | |
| Chy01g01719 | Chy-Chr1:22981477 | Chy01g01720 | Chy-Chr1:23000741 | 3.28E-26 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Chy01g01720 | K01051 | - | csv:101205321 | 598.971 |