Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Chy01g01721 | ATGTCGTTTTCATCACCAGCGGTGGTCGGACCTGGGTTCGTAGCAGTAAACATGACATTCCGAAACACCGCCGGAGCCATAAAGCACCAAGCCGTCGCCGTCCGTAACGGCGCCGACTTATCAACATTCTACCTCTGTAGCTTCGAAGCATACCAAGACACCTTATACACTCATTCCCTCCGCCAATTCTACCGCGACTGTGACATCTACGGCACTGTCGACTTCATCTTCGGCAATGCCGCCGTCGTCTTCCAGAACTGCAACATTTACCCACGCCTTCCCATGACCAACCAGTTCAACGCCATCACCGCCCAAGGCCGGACCGACCCAAATCAGAACACCGGCACCTCGATCTACAATTGCCGAATCACGGCCGCCGACGATCTGGCGAACAACAGTGACGCCGGCGTGAAGACTTTCCTGGGACGGCCGTGGAAGGAGTACTCGAGGACAGTTTATATGCAGAGCTTTATGGATGATTTGATTAATCCGGCGGGATGGAGAGCTTGGGATGGGGATTTTGCTTTGAACACTTCGTATTATGCGGAATTTGGGAATTTTGGGCCGGGATCTAACACGTCAGAGAGGGTTACCTGGGCGGGTTTTCATTTGATTAATGATACTGATGCTGGGAATTTCACGGCTGGGAATTTTGTGTTGGCGGATGATTGGTTGCCGCAGACCGGCGTTCCATACGATAGCGGCCTGACGGAGTAG | 717 | 53.0 | MSFSSPAVVGPGFVAVNMTFRNTAGAIKHQAVAVRNGADLSTFYLCSFEAYQDTLYTHSLRQFYRDCDIYGTVDFIFGNAAVVFQNCNIYPRLPMTNQFNAITAQGRTDPNQNTGTSIYNCRITAADDLANNSDAGVKTFLGRPWKEYSRTVYMQSFMDDLINPAGWRAWDGDFALNTSYYAEFGNFGPGSNTSERVTWAGFHLINDTDAGNFTAGNFVLADDWLPQTGVPYDSGLTE* | 239 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 23002743 | 23003459 | + | Chy1G017210.1 | Chy01g01721 | 218902 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Chy01g01721 | 238 | SUPERFAMILY | Pectin lyase-like | 7 | 235 | IPR011050 | - | |
| Chy01g01721 | 238 | Pfam | Pectinesterase | 6 | 221 | IPR000070 | GO:0030599|GO:0042545 | |
| Chy01g01721 | 238 | PANTHER | PECTINESTERASE/PECTINESTERASE INHIBITOR 7-RELATED | 7 | 236 | - | - | |
| Chy01g01721 | 238 | Gene3D | - | 3 | 236 | IPR012334 | - | |
| Chy01g01721 | 238 | ProSitePatterns | Pectinesterase signature 2. | 69 | 78 | IPR033131 | - | |
| Chy01g01721 | 238 | PANTHER | PECTINESTERASE | 7 | 236 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Chy01g01721 | Chy-Chr1:23002743 | Chy10g01212 | Chy-Chr10:16839372 | 1.55E-110 | dispersed | |
| Chy01g01719 | Chy-Chr1:22981477 | Chy01g01721 | Chy-Chr1:23002743 | 2.74E-98 | proximal |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Chy01g01721 | K01051 | - | csv:101205321 | 488.804 |