Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g01727 ATGGCGACGAGGAATCGAACTGCACAGTTTAGAAGGCACAGGGATGCCGTGAAGAGCGTCCGTGCCCCTCTATCCTCTTCGGCAGCTGGTTCCAGTGGACCGGTTATTGAGATGGTGAGTTCGTCTCTTCTTCGTTCGAAGCGCTCTTCTTCTTATGCTCCTCTCAGCACTGAAGATCCAGGACCTTCGAGCAGCGATGCATTTATGGTGGGTCTACCTCCAGCTTGGGTGGATGATTCTGAAGAAATAACTGTTAATATACAGAAAATTCGAAGGAAGATGGCAGAGTTAGTCAAGGCTCATTCCAAAGCTTTAATGCCTTCTTTTGCTGATGGCAAAGAAGACGAGCATACGATTGAGGCACTTACGTTAGAGATTACCAATCTTTTGAAAACCTCTGAGAAGAGGTTGAAGAAAATTTCTAGTACAGGGTCTTCAGAGGATATTAACATCAGAAAAAATGTCCAGCGTTCTCTTGCTACAGAGCTTCAGAATCTTTCTATGGATCTTCGTAGAAGACAATCAATGTATTTGAAACGTCTACAGCAGCAAAAGGAGGGACATGATGGAATTGATTTGGAGATAAATTTGAATGGAAACCGAGCTCTCCAGGAGGATGACGGATATGATGAATTTGGAACAAATGAAAACCAAACCATGACATTAGATGGTCAGCACATTCAGGGAAGGGAGAAAGAGATTAAACAGGTTATAAAATCCGTAAATGAGCTTGCCCAAATTATGAAGGATCTCTCAACCCTTGTCATAGACCAGGGTACCATTGTCGATAGAATTGACCACAATATTCAGAATGTTGCTGTTTCAGTTGAAGAGGGCTTGAAACAACTTCAAAAGGCAGAGAAGACACAGAAAAATGGAGGAATGGTGAAATGTGCAACAGTGCTTGTTATTATGTGTTTCATAATGCTGGCAGTTGATCAACTCAGCAGATGCCGTTCCTTTTCGTGTATTATTCTCAAAGTCTTGGAATTGGGCATTTTGTAG 1005 42.39 MATRNRTAQFRRHRDAVKSVRAPLSSSAAGSSGPVIEMVSSSLLRSKRSSSYAPLSTEDPGPSSSDAFMVGLPPAWVDDSEEITVNIQKIRRKMAELVKAHSKALMPSFADGKEDEHTIEALTLEITNLLKTSEKRLKKISSTGSSEDINIRKNVQRSLATELQNLSMDLRRRQSMYLKRLQQQKEGHDGIDLEINLNGNRALQEDDGYDEFGTNENQTMTLDGQHIQGREKEIKQVIKSVNELAQIMKDLSTLVIDQGTIVDRIDHNIQNVAVSVEEGLKQLQKAEKTQKNGGMVKCATVLVIMCFIMLAVDQLSRCRSFSCIILKVLELGIL* 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 23040642 23044458 + Chy1G017270.1 Chy01g01727 218908
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g01727 334 PANTHER SYNTAXIN 1 314 IPR045242 -
Chy01g01727 334 CDD SNARE_syntaxin16 227 285 - -
Chy01g01727 334 PANTHER SYNTAXIN OF PLANTS PROTEIN 1 314 - -
Chy01g01727 334 SMART tSNARE_6 218 286 IPR000727 -
Chy01g01727 334 Gene3D - 73 278 - -
Chy01g01727 334 SUPERFAMILY t-snare proteins 72 279 IPR010989 GO:0016020|GO:0016192
Chy01g01727 334 MobiDBLite consensus disorder prediction 1 33 - -
Chy01g01727 334 Pfam SNARE domain 260 311 IPR000727 -
Chy01g01727 334 SMART SynN_4 67 182 IPR006011 GO:0016020
Chy01g01727 334 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 224 286 IPR000727 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g01727 Chy-Chr1:23040642 Chy05g01060 Chy-Chr5:15128760 5.12E-139 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g01727 K08489 - csv:101204192 578.941