Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g01787 ATGGTGGCTGAAGCTGAGGTTGTTGTTTGTTCGAAGAGCCTCCCGGTTTTGGAGGTCCCGTATTTTGGTAAAGAGACTTGTCTTGTTGATGAAATTGAGTCCATCGATGGTGGGATTTCGATTGATCCGACTCTTGATCGTGTTCGTGCTTCCGAGTCGGTTTGTTCCAGTTCTCAATCGGATAAACCCATGAAGAAAATTCCAGACTCCGAGGTCGATGCGGCCAACGGAAGGGAATTTCCGAGCCTCCGGTCGGGAAGTTTTGCTGATATTGGACCTAGGAGATACATGGAAGATGAACATATAAGGATAGATGATTTATCTTCACATTTAGGATCGCTCTTTAAGTTTCCCAAGCCAAGTGCTTTCTATGGGGTGTTTGATGGACATGGAGGTCCTGAAGCGGCAGCTTATATCAGAAAGAATGTTCTTAGACTCTTTTTCGAGGATGTTAGTTTCCCACAAATTCCAGATATCGATGAAGTCTTGCCGGAGGAGATTGAAACTTGCCTTCGAAAAGCATTTCTTCTTGCTGATCGAGCTCTTGCTGATGATTCCAGTGTCAGCAGCTCATCCGGGACGACGGCCCTGACAGCTCTTGTTCTTGGAAGGCTTTTAATGGTGGCAAATGCTGGAGACTGCCGAGCAGTTCTCAGCCGGAATGGAGAGGCAGTAGATATGTCTCAGGACCACCGGCCGGTATATTCTCTAGAGAAGCAACGAGTAGAAGAGTTGGGTGGCTATGTTGATGGTGGCTATCTCAATGGTGTTTTATCGGTTTCTAGGGCCTTAGGGGATTGGGACATGAAGCTCCCAGATGGTTCTCCTTCACCTCTCATTGCAGAACCAGAATGCAGGCAGATGGTTCTTACAGAAGAGGATGAGTTCTTGATCATAGCCTGCGACGGTATATGGGATGTGATGTCAAGCCAGCAAGCAGTCAATGTAGTTCGCCAGGGACTTCAACGCCACGACGACCCTGAGCGGTGTGCAAGAGACCTTGTCCTGCAGGCTTTGCGATTAGACTCGTTCGATAACCTAACTGTTGTTGTTGTTTGCTTCTCTAGTTTCCATCCCGGCAATTCTCCACTAACGCAGCAGCGGAAGTTACGATACTGCAGTCTCTCAGCACAGGCTCTTTGTAGCTTGCAAAAATGGTTGGATAACAGTGGATGCCAATGA 1182 47.72 MVAEAEVVVCSKSLPVLEVPYFGKETCLVDEIESIDGGISIDPTLDRVRASESVCSSSQSDKPMKKIPDSEVDAANGREFPSLRSGSFADIGPRRYMEDEHIRIDDLSSHLGSLFKFPKPSAFYGVFDGHGGPEAAAYIRKNVLRLFFEDVSFPQIPDIDEVLPEEIETCLRKAFLLADRALADDSSVSSSSGTTALTALVLGRLLMVANAGDCRAVLSRNGEAVDMSQDHRPVYSLEKQRVEELGGYVDGGYLNGVLSVSRALGDWDMKLPDGSPSPLIAEPECRQMVLTEEDEFLIIACDGIWDVMSSQQAVNVVRQGLQRHDDPERCARDLVLQALRLDSFDNLTVVVVCFSSFHPGNSPLTQQRKLRYCSLSAQALCSLQKWLDNSGCQ* 394
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 23499833 23501467 + Chy1G017870.1 Chy01g01787 218968
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g01787 393 PANTHER PROTEIN PHOSPHATASE 2C 49-RELATED 1 372 - -
Chy01g01787 393 SUPERFAMILY PP2C-like 80 356 IPR036457 -
Chy01g01787 393 ProSiteProfiles PPM-type phosphatase domain profile. 84 354 IPR001932 -
Chy01g01787 393 CDD PP2Cc 84 354 IPR001932 -
Chy01g01787 393 SMART PP2C_4 74 352 IPR001932 -
Chy01g01787 393 Pfam Protein phosphatase 2C 94 346 IPR001932 -
Chy01g01787 393 ProSitePatterns PPM-type phosphatase domain signature. 123 131 IPR000222 GO:0043169
Chy01g01787 393 SMART PP2C_SIG_2 99 354 IPR001932 -
Chy01g01787 393 Gene3D - 64 358 IPR036457 -
Chy01g01787 393 PANTHER PROTEIN PHOSPHATASE 2C 1 372 IPR015655 GO:0004722|GO:0006470
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g01787 Chy-Chr1:23499833 Chy07g00305 Chy-Chr7:2510023 4.49E-42 dispersed
Chy03g01706 Chy-Chr3:18639985 Chy01g01787 Chy-Chr1:23499833 2.08E-37 transposed
Chy05g01245 Chy-Chr5:16855973 Chy01g01787 Chy-Chr1:23499833 2.13E-85 transposed
Chy07g00407 Chy-Chr7:3226570 Chy01g01787 Chy-Chr1:23499833 1.33E-98 transposed
Chy01g01787 Chy-Chr1:23499833 Chy11g01602 Chy-Chr11:22569796 2.51E-130 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g01787 K14803 - csv:101216626 741.88