Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g01807 ATGGGATGCTTTGGTTGCTGCGAAGAAGATGTTATCCAGAAGGCTGCTGATAATAGCAACACGTACCAAGTAAAAACTTCAGCAGGAACTGATGAAAGCTATCACAAACGGCAAACTGCACCTAAAAGTCCTCCAATAGTGAAAATCCAGCCCATTGAAGTCCCTGCCATATCATTTGGGGAACTAAAGGAGGTAACCAAAAATTTTGATGCCGACTGTCTGATTGGAGAGGGTTCCTACGGTAGAGTATACTATGGGGTATTTACAAGTGGGCAGACTGTGGGAATTAAGAAGTTGGATGCCAGCAAACAATCAGATGATGAATTCTTATCCCAGGTCTCCATGGTTTCAAGACTAAAGCACGATAATTTTCTAAACTTGATTGGGTACTGTGTTGGTGGCAATTCTCGAATTCTTGCATATGAGTATGCTTCAAACGGATCTCTTCACGACATTTTACACGGGAGGAAAGGAGTCAAAGGATCACAACCCGGCCCTGTTCTTTCCTGGGCACAAAGAGTAAAAATTGCTGTAGGTGCTGCAAAGGGGTTGGAGTATTTGCACGAAAAGGTCGATCCTCATATCACCCATCGTGACATAAAATCCAGCAACGTACTAATATTTGATGATGATTTGGCAAAAATTGCTGACTTTGATTTGTCAAACCAAGCCCCTGATATGGCTGCACGGCTTCACTCCACCCGTGTTCTTGGAACCTTTGGCTATCATGCTCCCGAATACGCAATGACTGGACAATTGAATTCCAAGAGTGATGTGTACAGCTTTGGTGTTGTCCTGCTTGAACTTTTGACAGGAAGAAAGCCAGTTGATCATACATTACCTCGAGGACAGCAAAGCCTCGTGACATGGGCCACGCCCAAACTTTGCGAAGATAAAGTTAAGCAGTGTGTTGATGCAAAACTAGGAAATGAGTACCCTCCTAAGTCAGTTGCTAAGTTTGCAGCAGTTGCTGCATTATGCGTTCAATACGAAGCAGATTTCAGACCAAACATGAGTATTGTAGTCAAAGCTCTTCAACCACTCTTAAATGCCCGTCCTGGTCCTTGA 1068 43.73 MGCFGCCEEDVIQKAADNSNTYQVKTSAGTDESYHKRQTAPKSPPIVKIQPIEVPAISFGELKEVTKNFDADCLIGEGSYGRVYYGVFTSGQTVGIKKLDASKQSDDEFLSQVSMVSRLKHDNFLNLIGYCVGGNSRILAYEYASNGSLHDILHGRKGVKGSQPGPVLSWAQRVKIAVGAAKGLEYLHEKVDPHITHRDIKSSNVLIFDDDLAKIADFDLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLNSKSDVYSFGVVLLELLTGRKPVDHTLPRGQQSLVTWATPKLCEDKVKQCVDAKLGNEYPPKSVAKFAAVAALCVQYEADFRPNMSIVVKALQPLLNARPGP* 356
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 23611503 23615660 + Chy1G018070.1 Chy01g01807 218988
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g01807 355 Gene3D Phosphorylase Kinase; domain 1 28 143 - -
Chy01g01807 355 MobiDBLite consensus disorder prediction 23 42 - -
Chy01g01807 355 PIRSF ILK 12 352 - -
Chy01g01807 355 Gene3D Transferase(Phosphotransferase) domain 1 144 352 - -
Chy01g01807 355 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 1 353 - -
Chy01g01807 355 CDD STKc_IRAK 75 348 - -
Chy01g01807 355 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 1 353 - -
Chy01g01807 355 Pfam Protein tyrosine and serine/threonine kinase 74 345 IPR001245 GO:0004672|GO:0006468
Chy01g01807 355 ProSiteProfiles Protein kinase domain profile. 69 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy01g01807 355 SUPERFAMILY Protein kinase-like (PK-like) 44 345 IPR011009 -
Chy01g01807 355 SMART serkin_6 69 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy01g01807 355 ProSitePatterns Serine/Threonine protein kinases active-site signature. 195 207 IPR008271 GO:0004672|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Chy01g01807 Chy04g01193 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g01807 Chy-Chr1:23611503 Chy07g01635 Chy-Chr7:20364310 8.83E-89 dispersed
Chy03g00376 Chy-Chr3:5208475 Chy01g01807 Chy-Chr1:23611503 1.86E-175 transposed
Chy04g01794 Chy-Chr4:24214910 Chy01g01807 Chy-Chr1:23611503 8.85E-173 transposed
Chy07g01432 Chy-Chr7:18834589 Chy01g01807 Chy-Chr1:23611503 2.33E-176 transposed
Chy01g01807 Chy-Chr1:23611503 Chy04g01193 Chy-Chr4:18348402 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
71004 PF07714 PK_Tyr_Ser-Thr 4.70E-44 CL0016 Chy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g01807 K13436 - csv:101215263 715.301