Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g01830 ATGGCGAAATCCGAGCATCGCACTAAGCGCCTTAGAATTACGAGGGGGGAAGATGATTATATGCCTGGAAGTATAATTGAGATTGAGCTTCATAACTTTATGACCTTTAACCACCTGAAATGTAAACCAGGATCACGTCTAAACCTTGTAATTGGACCTAACGGATCTGGTAAAAGCTCTATTGTATGTGCTATTGCCCTTGGCCTTGGTGGTGAGCCTCAGCTCCTTGGAAGGGCAACCAGTGTTGGAGCATACGTGAAGCGTGGGGAGGAGTCTGGTTATGTTAGAATAACCTTGAGAGGGAATACTAAAGAGGAAAAGATTACAATTACACGTAAAATGGACACACACAACAAATCCGAGTGGCTGTTCAATGGAAAAGTTGTGCCGAAAAAAGATGTAGCTGGAATTATTCAAAGGTTTAATATTCAAGTTAATAATTTAACTCAATTTTTACCTCAGGACAGGGTTTGTGAATTTGCCAAATTAACTCCTGTGCAACTTTTAGAAGAGACGGAAAAGGCAGTTGGTGACCCTCAACTTCCCATCCTACATCGTGCACTTGTTGATAAAAGCCATGGCATAAAAAGTATTGAAAGAGCTGTTGAGAAAAATGGTGACACCCTAGATCAGTTGAAGGCATTAAATGTTGAGCAAGAGAAAGATGTTGAGCATGTTCGTCAAAGAGATGAACTTTTAAAAAAGGTTGAGTCCATGAAAAAGAAACTGCCATGGTTAAGGTATGACATGAAAAAGGCTGAATACTTGGAAGTTAAGGAAAAAGAAAAGGAGGCCAAAAAGAAGTTAGATGAAGCTGCTAACACTTTGAATGATCTAAAGAAGCCAATTGAGAAACAAAAAATGGAGAAGGCAAAGTTGGATGCTAAAACTAAAAAGTATAGCACTCGTATTAACGATAATCACAAGAAAAGGGTGGAACTTCAGGAAACTGAAAACCGTTTGGGGGTGCAAGTGCAAGGAAAATTGAAAGAAATGGAAGACTTGAGGAAACAAGAAGAATCTCGTCAACAGAGAATCGCACGAGCTAAAGAGGAACTTGAAGCTGCTGAGTTTGAACTTCAAAATTTGCCTGCTTATGAACATCCCAAGGATGAGATTGAACGGTTGCGTGCTCAAATTTTGGAGTTGGAAGTTTCAGCAAGTCAGAAGAGACTTATGAAGTCAGAGATTGAGAAAAACATTTCCCAAAAAAGAAATACTTTGAGGCAATGCTCGGATAGGTTAAAGGATATGGAGAATACTAATACAAAACTACTACAGGCATTGAAAAATTCTGGAACAGAGAAGATTTTTGAAGCTTATCACTGGCTTCAAGAACATCGCCATGAGTTCAAGAAGGAGGTGTATGGTCCAGTGTTGCTAGAGGTTAATGTGTCCAATCGGACTCATGCTGACTACTTAGAAGGCCATATTCCATCCTATGTCTGGAAGTCCTTCATAACCCAAGATTCTCATGATCGCGACATTATGGTAAAAAACTTGGGCTCTTTTGGCGTTCCTGTCTTAAACTATGTGGGAGGTGAAAGGCGCACAAATCAGCATTTTGAGTTGTCTGAGGAGGTTCGTGCATTTGGCATATATTCTCGGCTAGACCAAATTTTTGATGCTCCTGCAGCTGTAAAGGAGGTTTTGACCATGCAGTTTGGTTTGGAACATTCATATATTGGTTCAAAGGTAACTGATCAAAAGGCAGACGAGGTCTCAAAATTGGGAATTTTAGATTTTTGGACTCCAGATAATCATTATCGATGGTCTCGCTCTAGATACGGTGGTCATATCTCCGGAAGTGTGGAACCAGTTGATCGCTCACGTCTTCTTTTGTGCAACTTGGATGCGGGAGAAATTGATGGGCTTCGCTCTAGGAAAAATGAGCTAGAAGAATCTGTTTCTGCCTTAGAAGAAAATTGTAAATCATGTCAGAATGAGCTAAGATTGATAGAGGATGAAGAAGCTAAACTTCGCAAACATCGAGAAAACATTTTAAATACTGTGCAACATGAGAAGAGAAAACGACGTGAAATGGAAAATCGCATTGATCAAAGGAAAAAGAAATTAGAATCTATGGAGCGGGAAGATGACTTGGATACTGTTGTGGCCAAGCTTGTCGACCAAGCTGCAAATTTTAACATTCAGAGGTTCCATTGTGCAATTGAAATTAAGAATTTGCTTCTTGAAGCCGTTTCCTATAGACAGAGCTTGACTAAGAACCATATGTCTTCCATTGAAATTGAAGCAAAGATCAGAGAATTGGAGGTTAATCTAAAGCAGCATGAAAAGGTTGCTCTGCAAGCATCCGTGCAGTTTGAGTACTGCAAGAAGGAAGTTGAGGACTATCTACAGCAACTTTCAGCTGCCAAGAAGTATGCAGAATCTATTGCTGCGATCACACCTGAACTTGAGAAGGACTTTCTTGAGATGCCTACTACAATTGAGGAATTGGAGGCTGCTATTCAAGATAATATCTCTCAAGCTAATTCCATTCTATTCTTAAACCATAACGTGCTTGAGGAATATGAACATCGTCAGCGTCAGATAAACATCATTGCACGAAAACTAGAGGCTGATAAACATGAACTAAGGAAGTGTATGGCTGAAGTTGATGAGCTGAAGGGAAATTGGCTCCCAACATTAAGAAAACTTGTTTCTCAGATAAATGAAACTTTTAGTCGCAATTTTCAAGAGATGGCTGTTGCTGGAGAAGTGTTATTGGATGAGCATGATATGGACTTTGATCAATTTGGAATACTTATTAAAGTGAAGTTCAGACAATCCGGTCAGCTTCAGGTTCTCAGTGCACATCATCAATCTGGAGGGGAACGATCGGTGTCAACAATTCTGTATCTTGTTTCCCTTCAAGACCTTACCAACTGCCCATTTAGAGTAGTTGACGAGATAAACCAAGGAATGGATCCCATAAATGAACGGAAGATGTTCCAGCAATTGGTGAGAGCTGCCAGCCAAACCAATACACCACAGTGTTTCCTACTGACTCCAAAGTTGCTTCCAGAACTGGAATATAGCGAGGCCTGTACTATACTAAATATAATGAATGGTCCTTGGATCGAGCAGCCCTCGAGAGGTTTTCTTCTCTTCCCTTTGTGTTGTTTCCCCGAGTAA 3138 40.28 MAKSEHRTKRLRITRGEDDYMPGSIIEIELHNFMTFNHLKCKPGSRLNLVIGPNGSGKSSIVCAIALGLGGEPQLLGRATSVGAYVKRGEESGYVRITLRGNTKEEKITITRKMDTHNKSEWLFNGKVVPKKDVAGIIQRFNIQVNNLTQFLPQDRVCEFAKLTPVQLLEETEKAVGDPQLPILHRALVDKSHGIKSIERAVEKNGDTLDQLKALNVEQEKDVEHVRQRDELLKKVESMKKKLPWLRYDMKKAEYLEVKEKEKEAKKKLDEAANTLNDLKKPIEKQKMEKAKLDAKTKKYSTRINDNHKKRVELQETENRLGVQVQGKLKEMEDLRKQEESRQQRIARAKEELEAAEFELQNLPAYEHPKDEIERLRAQILELEVSASQKRLMKSEIEKNISQKRNTLRQCSDRLKDMENTNTKLLQALKNSGTEKIFEAYHWLQEHRHEFKKEVYGPVLLEVNVSNRTHADYLEGHIPSYVWKSFITQDSHDRDIMVKNLGSFGVPVLNYVGGERRTNQHFELSEEVRAFGIYSRLDQIFDAPAAVKEVLTMQFGLEHSYIGSKVTDQKADEVSKLGILDFWTPDNHYRWSRSRYGGHISGSVEPVDRSRLLLCNLDAGEIDGLRSRKNELEESVSALEENCKSCQNELRLIEDEEAKLRKHRENILNTVQHEKRKRREMENRIDQRKKKLESMEREDDLDTVVAKLVDQAANFNIQRFHCAIEIKNLLLEAVSYRQSLTKNHMSSIEIEAKIRELEVNLKQHEKVALQASVQFEYCKKEVEDYLQQLSAAKKYAESIAAITPELEKDFLEMPTTIEELEAAIQDNISQANSILFLNHNVLEEYEHRQRQINIIARKLEADKHELRKCMAEVDELKGNWLPTLRKLVSQINETFSRNFQEMAVAGEVLLDEHDMDFDQFGILIKVKFRQSGQLQVLSAHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQTNTPQCFLLTPKLLPELEYSEACTILNIMNGPWIEQPSRGFLLFPLCCFPE* 1046
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 23776959 23797537 - Chy1G018300.1 Chy01g01830 219011
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g01830 1045 CDD ABC_SMC5_euk 926 1028 - -
Chy01g01830 1045 CDD ABC_SMC5_euk 23 180 - -
Chy01g01830 1045 Coils Coil 842 879 - -
Chy01g01830 1045 Gene3D - 24 214 IPR027417 -
Chy01g01830 1045 Coils Coil 747 774 - -
Chy01g01830 1045 Pfam RecF/RecN/SMC N terminal domain 25 994 IPR003395 -
Chy01g01830 1045 Gene3D - 584 713 - -
Chy01g01830 1045 Gene3D - 848 1011 IPR027417 -
Chy01g01830 1045 Coils Coil 329 359 - -
Chy01g01830 1045 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 5 19 1033 IPR027131 GO:0000724|GO:0005524|GO:0006281|GO:0016887|GO:0030915
Chy01g01830 1045 Coils Coil 622 698 - -
Chy01g01830 1045 Coils Coil 209 229 - -
Chy01g01830 1045 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 25 996 IPR027417 -
Chy01g01830 1045 Coils Coil 394 428 - -
Chy01g01830 1045 Coils Coil 252 279 - -
Chy01g01830 1045 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 749 1005 IPR027417 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g01830 Chy-Chr1:23776959 Chy07g01391 Chy-Chr7:18523184 5.32E-16 dispersed
Chy08g00049 Chy-Chr8:1775008 Chy01g01830 Chy-Chr1:23776959 7.41E-06 dispersed
Chy01g01830 Chy-Chr1:23776959 Chy01g01833 Chy-Chr1:23810107 7.42E-23 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g01830 K22803 - csv:101210248 1983.76