Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g01830 ATGGCGAAATCCGAGCATCGCACTAAGCGCCTTAGAATTACGAGGGGGGAAGATGATTATATGCCTGGAAGTATAATTGAGATTGAGCTTCATAACTTTATGACCTTTAACCACCTGAAATGTAAACCAGGATCACGTCTAAACCTTGTAATTGGACCTAACGGATCTGGTAAAAGCTCTATTGTATGTGCTATTGCCCTTGGCCTTGGTGGTGAGCCTCAGCTCCTTGGAAGGGCAACCAGTGTTGGAGCATACGTGAAGCGTGGGGAGGAGTCTGGTTATGTTAGAATAACCTTGAGAGGGAATACTAAAGAGGAAAAGATTACAATTACACGTAAAATGGACACACACAACAAATCCGAGTGGCTGTTCAATGGAAAAGTTGTGCCGAAAAAAGATGTAGCTGGAATTATTCAAAGGTTTAATATTCAAGTTAATAATTTAACTCAATTTTTACCTCAGGACAGGGTTTGTGAATTTGCCAAATTAACTCCTGTGCAACTTTTAGAAGAGACGGAAAAGGCAGTTGGTGACCCTCAACTTCCCATCCTACATCGTGCACTTGTTGATAAAAGCCATGGCATAAAAAGTATTGAAAGAGCTGTTGAGAAAAATGGTGACACCCTAGATCAGTTGAAGGCATTAAATGTTGAGCAAGAGAAAGATGTTGAGCATGTTCGTCAAAGAGATGAACTTTTAAAAAAGGTTGAGTCCATGAAAAAGAAACTGCCATGGTTAAGGTATGACATGAAAAAGGCTGAATACTTGGAAGTTAAGGAAAAAGAAAAGGAGGCCAAAAAGAAGTTAGATGAAGCTGCTAACACTTTGAATGATCTAAAGAAGCCAATTGAGAAACAAAAAATGGAGAAGGCAAAGTTGGATGCTAAAACTAAAAAGTATAGCACTCGTATTAACGATAATCACAAGAAAAGGGTGGAACTTCAGGAAACTGAAAACCGTTTGGGGGTGCAAGTGCAAGGAAAATTGAAAGAAATGGAAGACTTGAGGAAACAAGAAGAATCTCGTCAACAGAGAATCGCACGAGCTAAAGAGGAACTTGAAGCTGCTGAGTTTGAACTTCAAAATTTGCCTGCTTATGAACATCCCAAGGATGAGATTGAACGGTTGCGTGCTCAAATTTTGGAGTTGGAAGTTTCAGCAAGTCAGAAGAGACTTATGAAGTCAGAGATTGAGAAAAACATTTCCCAAAAAAGAAATACTTTGAGGCAATGCTCGGATAGGTTAAAGGATATGGAGAATACTAATACAAAACTACTACAGGCATTGAAAAATTCTGGAACAGAGAAGATTTTTGAAGCTTATCACTGGCTTCAAGAACATCGCCATGAGTTCAAGAAGGAGGTGTATGGTCCAGTGTTGCTAGAGGTTAATGTGTCCAATCGGACTCATGCTGACTACTTAGAAGGCCATATTCCATCCTATGTCTGGAAGTCCTTCATAACCCAAGATTCTCATGATCGCGACATTATGGTAAAAAACTTGGGCTCTTTTGGCGTTCCTGTCTTAAACTATGTGGGAGGTGAAAGGCGCACAAATCAGCATTTTGAGTTGTCTGAGGAGGTTCGTGCATTTGGCATATATTCTCGGCTAGACCAAATTTTTGATGCTCCTGCAGCTGTAAAGGAGGTTTTGACCATGCAGTTTGGTTTGGAACATTCATATATTGGTTCAAAGGTAACTGATCAAAAGGCAGACGAGGTCTCAAAATTGGGAATTTTAGATTTTTGGACTCCAGATAATCATTATCGATGGTCTCGCTCTAGATACGGTGGTCATATCTCCGGAAGTGTGGAACCAGTTGATCGCTCACGTCTTCTTTTGTGCAACTTGGATGCGGGAGAAATTGATGGGCTTCGCTCTAGGAAAAATGAGCTAGAAGAATCTGTTTCTGCCTTAGAAGAAAATTGTAAATCATGTCAGAATGAGCTAAGATTGATAGAGGATGAAGAAGCTAAACTTCGCAAACATCGAGAAAACATTTTAAATACTGTGCAACATGAGAAGAGAAAACGACGTGAAATGGAAAATCGCATTGATCAAAGGAAAAAGAAATTAGAATCTATGGAGCGGGAAGATGACTTGGATACTGTTGTGGCCAAGCTTGTCGACCAAGCTGCAAATTTTAACATTCAGAGGTTCCATTGTGCAATTGAAATTAAGAATTTGCTTCTTGAAGCCGTTTCCTATAGACAGAGCTTGACTAAGAACCATATGTCTTCCATTGAAATTGAAGCAAAGATCAGAGAATTGGAGGTTAATCTAAAGCAGCATGAAAAGGTTGCTCTGCAAGCATCCGTGCAGTTTGAGTACTGCAAGAAGGAAGTTGAGGACTATCTACAGCAACTTTCAGCTGCCAAGAAGTATGCAGAATCTATTGCTGCGATCACACCTGAACTTGAGAAGGACTTTCTTGAGATGCCTACTACAATTGAGGAATTGGAGGCTGCTATTCAAGATAATATCTCTCAAGCTAATTCCATTCTATTCTTAAACCATAACGTGCTTGAGGAATATGAACATCGTCAGCGTCAGATAAACATCATTGCACGAAAACTAGAGGCTGATAAACATGAACTAAGGAAGTGTATGGCTGAAGTTGATGAGCTGAAGGGAAATTGGCTCCCAACATTAAGAAAACTTGTTTCTCAGATAAATGAAACTTTTAGTCGCAATTTTCAAGAGATGGCTGTTGCTGGAGAAGTGTTATTGGATGAGCATGATATGGACTTTGATCAATTTGGAATACTTATTAAAGTGAAGTTCAGACAATCCGGTCAGCTTCAGGTTCTCAGTGCACATCATCAATCTGGAGGGGAACGATCGGTGTCAACAATTCTGTATCTTGTTTCCCTTCAAGACCTTACCAACTGCCCATTTAGAGTAGTTGACGAGATAAACCAAGGAATGGATCCCATAAATGAACGGAAGATGTTCCAGCAATTGGTGAGAGCTGCCAGCCAAACCAATACACCACAGTGTTTCCTACTGACTCCAAAGTTGCTTCCAGAACTGGAATATAGCGAGGCCTGTACTATACTAAATATAATGAATGGTCCTTGGATCGAGCAGCCCTCGAGAGGTTTTCTTCTCTTCCCTTTGTGTTGTTTCCCCGAGTAA 3138 40.28 MAKSEHRTKRLRITRGEDDYMPGSIIEIELHNFMTFNHLKCKPGSRLNLVIGPNGSGKSSIVCAIALGLGGEPQLLGRATSVGAYVKRGEESGYVRITLRGNTKEEKITITRKMDTHNKSEWLFNGKVVPKKDVAGIIQRFNIQVNNLTQFLPQDRVCEFAKLTPVQLLEETEKAVGDPQLPILHRALVDKSHGIKSIERAVEKNGDTLDQLKALNVEQEKDVEHVRQRDELLKKVESMKKKLPWLRYDMKKAEYLEVKEKEKEAKKKLDEAANTLNDLKKPIEKQKMEKAKLDAKTKKYSTRINDNHKKRVELQETENRLGVQVQGKLKEMEDLRKQEESRQQRIARAKEELEAAEFELQNLPAYEHPKDEIERLRAQILELEVSASQKRLMKSEIEKNISQKRNTLRQCSDRLKDMENTNTKLLQALKNSGTEKIFEAYHWLQEHRHEFKKEVYGPVLLEVNVSNRTHADYLEGHIPSYVWKSFITQDSHDRDIMVKNLGSFGVPVLNYVGGERRTNQHFELSEEVRAFGIYSRLDQIFDAPAAVKEVLTMQFGLEHSYIGSKVTDQKADEVSKLGILDFWTPDNHYRWSRSRYGGHISGSVEPVDRSRLLLCNLDAGEIDGLRSRKNELEESVSALEENCKSCQNELRLIEDEEAKLRKHRENILNTVQHEKRKRREMENRIDQRKKKLESMEREDDLDTVVAKLVDQAANFNIQRFHCAIEIKNLLLEAVSYRQSLTKNHMSSIEIEAKIRELEVNLKQHEKVALQASVQFEYCKKEVEDYLQQLSAAKKYAESIAAITPELEKDFLEMPTTIEELEAAIQDNISQANSILFLNHNVLEEYEHRQRQINIIARKLEADKHELRKCMAEVDELKGNWLPTLRKLVSQINETFSRNFQEMAVAGEVLLDEHDMDFDQFGILIKVKFRQSGQLQVLSAHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQTNTPQCFLLTPKLLPELEYSEACTILNIMNGPWIEQPSRGFLLFPLCCFPE* 1046
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 23776959 23797537 - Chy1G018300.1 Chy01g01830 219011

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g01830 1045 CDD ABC_SMC5_euk 926 1028 - -
Chy01g01830 1045 CDD ABC_SMC5_euk 23 180 - -
Chy01g01830 1045 Coils Coil 842 879 - -
Chy01g01830 1045 Gene3D - 24 214 IPR027417 -
Chy01g01830 1045 Coils Coil 747 774 - -
Chy01g01830 1045 Pfam RecF/RecN/SMC N terminal domain 25 994 IPR003395 -
Chy01g01830 1045 Gene3D - 584 713 - -
Chy01g01830 1045 Gene3D - 848 1011 IPR027417 -
Chy01g01830 1045 Coils Coil 329 359 - -
Chy01g01830 1045 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 5 19 1033 IPR027131 GO:0000724|GO:0005524|GO:0006281|GO:0016887|GO:0030915
Chy01g01830 1045 Coils Coil 622 698 - -
Chy01g01830 1045 Coils Coil 209 229 - -
Chy01g01830 1045 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 25 996 IPR027417 -
Chy01g01830 1045 Coils Coil 394 428 - -
Chy01g01830 1045 Coils Coil 252 279 - -
Chy01g01830 1045 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 749 1005 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g01830 K22803 SMC5; structural maintenance of chromosomes protein 5 - csv:101210248 1983.76
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g01830 Chy-Chr1:23776959 Chy07g01391 Chy-Chr7:18523184 5.32E-16 dispersed
Chy08g00049 Chy-Chr8:1775008 Chy01g01830 Chy-Chr1:23776959 7.41E-06 dispersed
Chy01g01830 Chy-Chr1:23776959 Chy01g01833 Chy-Chr1:23810107 7.42E-23 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi13g1074 . . . . . . . . . Cmo17g00945 . . . . Sed07g0592 . Cpe12g00841 Bhi09g00709 Tan06g0629 Cmetu01g0859 . Hepe03g1771 . . . . . . . . . . Cone20ag1052 . . Lsi02g02546 . . . . . . . . . . . . . . . Cma17g00970 . Car17g00928 . . . . . . . . . Cla09g00408 Cam09g0435 Cec09g0438 Cco09g0425 Clacu09g0440 . Cre09g0421 . . Chy01g01830 Cme01g02432
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy01g01830 . 4 1033 Structural Maintenance of Chromosomes family AT5G15920 68.3 0.0e+00 1364.4
Chy07g01391 . 10 896 Structural Maintenance of Chromosomes family AT5G07660 61.0 3.4e-294 1008.1
Chy07g01392 . 1 156 Structural Maintenance of Chromosomes family AT5G07660 79.5 1.7e-67 255.0
Chy04g00988 . 24 166 Structural Maintenance of Chromosomes family AT5G07660 72.0 1.6e-54 211.8
Chy07g01391 . 7 896 Structural Maintenance of Chromosomes family AT5G61460 63.7 7.1e-313 1070.1
Chy07g01392 . 1 156 Structural Maintenance of Chromosomes family AT5G61460 84.6 8.5e-72 269.2
Chy04g00988 . 24 166 Structural Maintenance of Chromosomes family AT5G61460 76.2 1.2e-57 222.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008822 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 4 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy01g01830 Chy_Chr01 FPKM 16.235435 15.083333 14.994309 14.799379 9.872369 10.92551 12.483215 15.553576 15.787027 14.602233