Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g01852 ATGGCGAAGACTAGAGATCATGCGCCATCGCGATCGTTAGCAAATGATACATGTACAATTCGGCTGACTGAAATTTTTGGGAAGGCGACTAGGTCTATTTTGGGCTTCTTTATCATGATGGGTCTTTGCAATGGTGTGCATTACCTTTTGAGGCCATTTTCTCAACCTCGCATTACCTCTGATACGATCGTAGGTTTGGTTGTTGGCAACTTCATAAGGAAGCAACTTGAGTTATCAATGATTAAGACGCTGCGTTATATTGTCGACTTTGGTATGGTATGCTATATGTTTGTGCTGGGATTGGAGGTGGATCCATATGTAATCTTCAAAGCACCTACACGTGATGCTAAGGTAGCTTATGCTGGAATGATTTCAACACTCATCTTAGCCTGTTCCATAATCCCATTTATTGGCATGACAAAGTCAAAAGAGATCAGTTTCATACTCTCCCTCTCAACTGTCCTCTCTAGCACAGCTTCTCCTGTGCTAACCCGTTTGATTACCAGTCTTAAAATAGGTAAGTCAGATATAGGCCGGCTCGTCATTGCTGCTGGCATGCATTCTGATTTTATATCCACCCTCATGATCTGTGTTGGTTATCTCTTTTGCAAATGCCAAGAGACACGCATCTCCTTTATAAAAGGTTTTCAGTTAGGCATTCTATTATTGATCCAGGCAGTACTGACGGCGAAGGTTTCACCAGTATTCATGAACTGGGTAAATAACGAAAACCCCGAGGGTAAACCTATGAAAGGTCCTCACCTGGTTCTTGCAGTTGCTTTCATGGCCTTCCTTTGCTGCTGCCCTACTGTGTTTGGTTACAATCCGATTCTCAGTGCATTCTTAGCTGGAACATTTTTACCTCGAGAAGGTAGAGTATCAAGATGGGCAATTGGAAAAATTAATTACCTGCTTACTACCGTTTTCTATCCCATCTTCTTCTTTTGGATGGGGGTTGAATCCAAGCTGACTGACTTTGAACCTGGACAAATAATGACATGGGTCAGGTTAATTCTGCTTTTTGCTATTGCAACCATAGGAAAAGTTGTTGGTACTGTCATTGCTGGGGCAATTTTGGGGTTTCATTGGCCTGAATCAGTAGCACTTGGGCTGCTGTTAACCATGAAGGGCCATTTTCATATATACTTAGCTATTGCTGCAAAAACAGCCGGAAAGATAACTACATCTACGAGTATAGTGATGGTAATTGTAATCTTTTTCACAATCGTGCATGCCCCAAAAGTTGTAGCACATATAATCCAAAGGGCAAGGAAACGCACGCCTACACATCGAATGGCTCTCCAATTGCTTGATCCGTCAAGTGAGCTTAAGATCTTGTTATGTATACATGGACCTCAGAACACTCCAGCAGCCATTAACATCATGGAGATTTCTCGGGGGACAGCTAACCCTGGGGTTGTTGTATATGTTACAGACATGATTGAACTTACAGATGAAATAGCATCCACATTAGTTCAGGGTGAAGGAGTTGACAGCGTGACTGTAACCCACACAGGAGTGACGCAAATGAGAGAACAAGTTACTTCTGCAGTTCAAAGCTATGTAGATGAAAATGGAGAAGGGATTACCCTTAGAAGAATGTTGGCTCTCTCAACATTCAATTCTATGGCTCAGGACATTTGCATTTTGGCAGAGGAATTGATGGGAGCTCTTATCATACTGCCATTCCACAAGAGCCAGCGTGGAGACGGATCATTGAGTGAGGGCCAAACAGCTTTCCGCTATGTAAACCGCAAGGTTCTCAGACATGCCCCCTGCTCTGTGGGAATCCTAGTGGATCGAGGACTTGGATCAGTAGAGAAAATTTCAAGGTCCTATGTATCTCAAAATGTGGCAGTCATCTTCATTGGCGGTAAAGACGACCGAGAAGCATTAGCCTACGCTGGTCGAGTAGCAAGGCATCCCGGAGTTAAACTCTCAGTGATTAGATTCTTAGTGGATGCTGATGCAGTAAATGCTGCAAGAAGAGCGGGAACTTACAGGATAAGTGTGGCGGAGCAGGAAGAGGAAATGAGACAAGATGATGAATGCTTTGCCTATTTTTACGAACGACATGTGGCTGGTGGACATGTTGCTTATGTTGAAAAACATCTGGCCAGTTCCTCCGAGACGTATTCTACTTTGAAATCACTGGAAGGGCAATATGCCCTTATAATTGTAGGTCGAGGTGGGAAGGTTAACACGGTGTTAACTTTCGGGATGAATGACTGGCAACAATGTCCAGAACTGGGTCCTATAGGGGATATTCTCTCCGGTTCTGAATTCTCTGTTAGGACCTCAGTTTTGATCATCCATCAACACAATCTAAAAGGAGAGCTAGATGGGCTTGATGATGACTTTTCAATAATGTAG 2373 43.36 MAKTRDHAPSRSLANDTCTIRLTEIFGKATRSILGFFIMMGLCNGVHYLLRPFSQPRITSDTIVGLVVGNFIRKQLELSMIKTLRYIVDFGMVCYMFVLGLEVDPYVIFKAPTRDAKVAYAGMISTLILACSIIPFIGMTKSKEISFILSLSTVLSSTASPVLTRLITSLKIGKSDIGRLVIAAGMHSDFISTLMICVGYLFCKCQETRISFIKGFQLGILLLIQAVLTAKVSPVFMNWVNNENPEGKPMKGPHLVLAVAFMAFLCCCPTVFGYNPILSAFLAGTFLPREGRVSRWAIGKINYLLTTVFYPIFFFWMGVESKLTDFEPGQIMTWVRLILLFAIATIGKVVGTVIAGAILGFHWPESVALGLLLTMKGHFHIYLAIAAKTAGKITTSTSIVMVIVIFFTIVHAPKVVAHIIQRARKRTPTHRMALQLLDPSSELKILLCIHGPQNTPAAINIMEISRGTANPGVVVYVTDMIELTDEIASTLVQGEGVDSVTVTHTGVTQMREQVTSAVQSYVDENGEGITLRRMLALSTFNSMAQDICILAEELMGALIILPFHKSQRGDGSLSEGQTAFRYVNRKVLRHAPCSVGILVDRGLGSVEKISRSYVSQNVAVIFIGGKDDREALAYAGRVARHPGVKLSVIRFLVDADAVNAARRAGTYRISVAEQEEEMRQDDECFAYFYERHVAGGHVAYVEKHLASSSETYSTLKSLEGQYALIIVGRGGKVNTVLTFGMNDWQQCPELGPIGDILSGSEFSVRTSVLIIHQHNLKGELDGLDDDFSIM* 791
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 23975401 23978730 + Chy1G018520.1 Chy01g01852 219033

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g01852 790 Gene3D - 444 743 - -
Chy01g01852 790 Gene3D - 29 429 IPR038770 -
Chy01g01852 790 PANTHER CATION/H + ANTIPORTER 21 787 - -
Chy01g01852 790 PANTHER CATION/H(+) ANTIPORTER 28 21 787 - -
Chy01g01852 790 Pfam Sodium/hydrogen exchanger family 43 418 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g01852 - - - csv:101211645 1499.95
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g01852 Chy-Chr1:23975401 Chy11g00045 Chy-Chr11:506131 2.64E-117 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi13g1119 Blo06g00594 . . . . Bpe10g00541 . . . . . . . . Sed09g1353 . . Bhi09g00656 Tan06g0598 Cmetu01g0797 . . . . . . . . . . . . Cone20ag1063 . . Lsi02g02561 . . . . . . . . . . . . . . Cma08g00518 . Car08g00430 . . . . . . . . . . Cla09g00367 Cam09g0397 Cec09g0401 Cco09g0384 Clacu09g0400 . Cre09g0382 . . Chy01g01852 Cme01g02457
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy11g00045 . 11 805 Antiporter Super Family AT2G13620 72.4 0.0e+00 1156.4
Chy07g01186 . 15 776 Antiporter Super Family AT2G13620 50.3 1.4e-207 719.9
Chy08g00771 . 74 849 Antiporter Super Family AT3G53720 68.5 1.3e-287 985.7
Chy07g01186 . 86 773 Antiporter Super Family AT3G53720 50.3 1.0e-183 640.6
Chy07g01187 . 83 779 Antiporter Super Family AT3G53720 50.7 3.9e-183 638.6
Chy07g01187 . 1 779 Antiporter Super Family AT5G41610 69.5 9.1e-308 1052.7
Chy07g01186 . 9 797 Antiporter Super Family AT5G41610 67.1 5.7e-302 1033.5
Chy07g01185 . 1 811 Antiporter Super Family AT5G41610 63.6 2.2e-290 995.0
Chy07g01184 . 24 744 Antiporter Super Family AT5G41610 62.9 4.0e-255 877.9
Chy07g01186 . 16 774 Antiporter Super Family AT4G23700 66.8 4.1e-292 1000.7
Chy07g01185 . 11 816 Antiporter Super Family AT4G23700 63.0 7.8e-283 969.9
Chy07g01187 . 9 796 Antiporter Super Family AT4G23700 62.9 9.0e-279 956.4
Chy07g01184 . 24 744 Antiporter Super Family AT4G23700 61.0 1.3e-248 856.3
Chy07g01186 . 9 796 Antiporter Super Family AT3G17630 62.8 3.8e-274 941.0
Chy07g01187 . 11 779 Antiporter Super Family AT3G17630 63.8 1.1e-270 929.5
Chy07g01185 . 4 797 Antiporter Super Family AT3G17630 61.7 4.5e-267 917.5
Chy07g01184 . 24 744 Antiporter Super Family AT3G17630 59.2 3.3e-233 805.1
Chy08g00771 . 6 820 Antiporter Super Family AT3G17630 52.4 3.4e-206 715.3
Chy07g01185 . 4 799 Antiporter Super Family AT1G64170 57.3 7.3e-241 830.5
Chy07g01186 . 5 777 Antiporter Super Family AT1G64170 57.8 8.1e-240 827.0
Chy07g01187 . 15 784 Antiporter Super Family AT1G64170 56.4 1.5e-230 796.2
Chy07g01184 . 24 744 Antiporter Super Family AT1G64170 53.9 2.1e-203 706.1
Chy11g00045 . 11 805 Antiporter Super Family AT2G13620 72.4 0.0e+00 1156.4
Chy07g01186 . 15 776 Antiporter Super Family AT2G13620 50.3 1.4e-207 719.9
Chy07g01185 . 4 799 Antiporter Super Family AT1G64170 57.3 7.3e-241 830.5
Chy07g01186 . 5 777 Antiporter Super Family AT1G64170 57.8 8.1e-240 827.0
Chy07g01187 . 15 784 Antiporter Super Family AT1G64170 56.4 1.5e-230 796.2
Chy07g01184 . 24 744 Antiporter Super Family AT1G64170 53.9 2.1e-203 706.1
Chy07g01186 . 16 774 Antiporter Super Family AT4G23700 66.8 4.1e-292 1000.7
Chy07g01185 . 11 816 Antiporter Super Family AT4G23700 63.0 7.8e-283 969.9
Chy07g01187 . 9 796 Antiporter Super Family AT4G23700 62.9 9.0e-279 956.4
Chy07g01184 . 24 744 Antiporter Super Family AT4G23700 61.0 1.3e-248 856.3
Chy07g01187 . 1 779 Antiporter Super Family AT5G41610 69.5 9.1e-308 1052.7
Chy07g01186 . 9 797 Antiporter Super Family AT5G41610 67.1 5.7e-302 1033.5
Chy07g01185 . 1 811 Antiporter Super Family AT5G41610 63.6 2.2e-290 995.0
Chy07g01184 . 24 744 Antiporter Super Family AT5G41610 62.9 4.0e-255 877.9
Chy07g01186 . 9 796 Antiporter Super Family AT3G17630 62.8 3.8e-274 941.0
Chy07g01187 . 11 779 Antiporter Super Family AT3G17630 63.8 1.1e-270 929.5
Chy07g01185 . 4 797 Antiporter Super Family AT3G17630 61.7 4.5e-267 917.5
Chy07g01184 . 24 744 Antiporter Super Family AT3G17630 59.2 3.3e-233 805.1
Chy08g00771 . 6 820 Antiporter Super Family AT3G17630 52.4 3.4e-206 715.3
Chy08g00771 . 74 849 Antiporter Super Family AT3G53720 68.5 1.3e-287 985.7
Chy07g01186 . 86 773 Antiporter Super Family AT3G53720 50.3 1.0e-183 640.6
Chy07g01187 . 83 779 Antiporter Super Family AT3G53720 50.7 3.9e-183 638.6
Chy01g01852 . 47 791 Antiporter Super Family AT3G52080 54.2 7.3e-233 803.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008009 0 2 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy01g01852 Chy_Chr01 FPKM 8.331155 6.774776 7.586175 5.564952 3.441167 3.613847 5.015655 16.564955 14.766545 14.462626