Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g01870 ATGACGGACCCAAATTACTCCTCCAATTCCTTCAATTTCATCCATCTTCCTCCTTCCAATTTCCTCCTTTCCCAATGCCGTCGCCCTATTCCTCCTTCTCCTCCGCCACCGTCATCTCCGCCGCAAGCCCTCCCTCTCCTCAACACCCTCTCGCCGGAAACCGCCGATCATCCCTCCTCCTCCACCACCACTTGTAGTTACGAAGACGAATCTGCCGTTCTTGGTCTTGACATCAGCCTCTCTTGCCCTAGCTCGGATCTAGACTCCTTCTCGCCAGACCCCGGCACCGGGAAAATAATCGACGGCGACGTTTCCGACCACCCTTTGCCGATCTCCGGTAAGGGTCAGTACTGGATTCCGACCCCATCGCAGATCCTCATCGGTCCTACTCAGTTCTCTTGCCCTCTTTGTTCTAAAGCCTTCAATAGATACAATAATCTTCAGATGCATATGTGGGGACACGGTTCACAATACAGAAAAGGACCAGAATCACTCAAAGGCACACAACCAACCGCAATGCTAAGGCTACCATGCTACTGCTGCGCAGTTGGTTGCAAACACAACATAGACAACCCTCGTTCACGCCCACTCAAAGATTTCCGAACCCTCCAGACCCATTACAAGCGCAAGCACGGCATCAAGCCTTTCACTTGTAGAAAATGCACCAAAGCCTTTGCTGTTAAGGGCGATTGGCGAACCCACGAAAAGAATTGTGGCAAGATTTGGTATTGCTTTTGTGGCTCTGATTTTAAACATAAACGCTCCCTTAAAGACCACATCAAAGCCTTTGGTCGCGGCCATGGTGCCCTTGGCCTTGATTACTTTGATGATGATAATGAACCCTCTCCTGAACTCGATGAAGATCATCTCTTTGTTCGCCTTCGTTAA 888 50.11 MTDPNYSSNSFNFIHLPPSNFLLSQCRRPIPPSPPPPSSPPQALPLLNTLSPETADHPSSSTTTCSYEDESAVLGLDISLSCPSSDLDSFSPDPGTGKIIDGDVSDHPLPISGKGQYWIPTPSQILIGPTQFSCPLCSKAFNRYNNLQMHMWGHGSQYRKGPESLKGTQPTAMLRLPCYCCAVGCKHNIDNPRSRPLKDFRTLQTHYKRKHGIKPFTCRKCTKAFAVKGDWRTHEKNCGKIWYCFCGSDFKHKRSLKDHIKAFGRGHGALGLDYFDDDNEPSPELDEDHLFVRLR* 296
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 24122003 24124845 + Chy1G018700.1 Chy01g01870 219051
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g01870 295 ProSitePatterns Zinc finger C2H2 type domain signature. 134 154 IPR013087 -
Chy01g01870 295 ProSiteProfiles Zinc finger C2H2 type domain profile. 132 159 IPR013087 -
Chy01g01870 295 MobiDBLite consensus disorder prediction 25 66 - -
Chy01g01870 295 Gene3D Classic Zinc Finger 131 154 - -
Chy01g01870 295 Gene3D Classic Zinc Finger 194 267 - -
Chy01g01870 295 PANTHER ZINC FINGER PROTEIN WIP2-LIKE 19 288 - -
Chy01g01870 295 MobiDBLite consensus disorder prediction 28 43 - -
Chy01g01870 295 SUPERFAMILY beta-beta-alpha zinc fingers 199 236 IPR036236 -
Chy01g01870 295 SUPERFAMILY beta-beta-alpha zinc fingers 125 154 IPR036236 -
Chy01g01870 295 SMART c2h2final6 179 211 IPR013087 -
Chy01g01870 295 SMART c2h2final6 216 236 IPR013087 -
Chy01g01870 295 SMART c2h2final6 132 154 IPR013087 -
Chy01g01870 295 MobiDBLite consensus disorder prediction 44 66 - -
Chy01g01870 295 PANTHER ZINC FINGER PROTEIN WIP2 19 288 IPR043584 GO:0003700|GO:0010468
Chy01g01870 295 Pfam Zinc finger, C2H2 type 132 151 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g01870 Chy-Chr1:24122003 Chy08g00030 Chy-Chr8:1064979 1.82E-109 dispersed
Chy01g01870 Chy-Chr1:24122003 Chy04g01751 Chy-Chr4:23886755 3.10E-78 wgd
Chy01g01870 Chy-Chr1:24122003 Chy05g00122 Chy-Chr5:942824 1.23E-104 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17364 PF00096 zf-C2H2 0.0015 CL0361 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g01870 - - csv:101209911 589.341