Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g01900 ATGGAGCTTGGCCTCAGCTTGGGCGACGCCCCCAAGCCCTTTCGCTTTGTCGAGAAGCAATCTCAAGTCCCCTCCCCCCAGCGCCGACTTTCCCGCAAAGATTTGGGCTTCTGTGTCGACTTATCGATTGGCCGTTCCGTCGCCGGAGATAAAGAAGACGACGAAGACAAACCTAATCAAGGAGAAGATGAATCCGACGGTAATGAATATCTACCGATTCAACTCGATCTTCTCCCTCATAATCCCGTTCCCCGAAACCTAACTAATCCGTACCAAGGATCTCCATGGCCGCCGTCCGAAAACGATGAAGGCGAAGATCGAACGGCATCGCCGAATAGCGCAGCGTCGTCGTTTCATATGGAATTTGGACTGTACGGCAGCGGAGGCAACATTTCTTGCCGGAGAGATCAAATGGAAAATGGCGTAATGAACGAAGTAGGTGAATCTGAAAGAGCTTCTTCAAGAGCTAGCGATGAAGACGAAAATGGCTGTACAAGGAAGAAACTCAGACTCTCTAAAGAACAATCCGCTTTTCTTGAAGAAAGCTTCAAAGAACACAACACATTGAACCCTAAACAGAAAGTGGCACTGGCTAAGCAACTGAATCTCCGTGCTCGCCAAGTGGAAGTTTGGTTTCAAAATAGAAGAGCAAGGACGAAATTAAAGCAAACGGAGGTAGATTGTGAGTATTTGAAAAGATGTTGCGAGACATTAACAGAAGAGAATCGACGGCTTCAAAAGGAGCTTCAAGAATTAAGAGCTTTGAAAACCACAAATTCACTCTACATGCAATTACCAGCTACAACACTAACCATGTGTCCGTCTTGTGAAAGAGTAACCTCATCCTCCGCCGCTTCCACCGTCGCTGCGACGGAGGGGGTTACAAAACGATCTGGGTTAGCCATTGGTGGTGGGCGACCAGGTTCTTCATCTTTCCCATTTTCTGCTAAAACACAGTCCCACCAGTCAACAGCTTCATGA 981 47.6 MELGLSLGDAPKPFRFVEKQSQVPSPQRRLSRKDLGFCVDLSIGRSVAGDKEDDEDKPNQGEDESDGNEYLPIQLDLLPHNPVPRNLTNPYQGSPWPPSENDEGEDRTASPNSAASSFHMEFGLYGSGGNISCRRDQMENGVMNEVGESERASSRASDEDENGCTRKKLRLSKEQSAFLEESFKEHNTLNPKQKVALAKQLNLRARQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELRALKTTNSLYMQLPATTLTMCPSCERVTSSSAASTVAATEGVTKRSGLAIGGGRPGSSSFPFSAKTQSHQSTAS* 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 24280237 24281514 - Chy1G019000.1 Chy01g01900 219081
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g01900 326 CDD homeodomain 166 223 IPR001356 GO:0003677
Chy01g01900 326 MobiDBLite consensus disorder prediction 311 326 - -
Chy01g01900 326 Pfam Homeobox associated leucine zipper 222 256 IPR003106 GO:0006355|GO:0043565
Chy01g01900 326 ProSitePatterns 'Homeobox' domain signature. 197 220 IPR017970 GO:0000981|GO:0006355
Chy01g01900 326 MobiDBLite consensus disorder prediction 44 115 - -
Chy01g01900 326 MobiDBLite consensus disorder prediction 145 167 - -
Chy01g01900 326 SMART HOX_1 164 226 IPR001356 GO:0003677
Chy01g01900 326 MobiDBLite consensus disorder prediction 151 167 - -
Chy01g01900 326 Gene3D - 170 220 - -
Chy01g01900 326 Coils Coil 228 258 - -
Chy01g01900 326 PANTHER - 1 297 - -
Chy01g01900 326 MobiDBLite consensus disorder prediction 295 326 - -
Chy01g01900 326 Pfam Homeodomain 166 220 IPR001356 GO:0003677
Chy01g01900 326 MobiDBLite consensus disorder prediction 1 31 - -
Chy01g01900 326 ProSiteProfiles 'Homeobox' domain profile. 162 222 IPR001356 GO:0003677
Chy01g01900 326 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 1 297 - -
Chy01g01900 326 SMART halz 222 265 IPR003106 GO:0006355|GO:0043565
Chy01g01900 326 SUPERFAMILY Homeodomain-like 159 223 IPR009057 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g01900 Chy-Chr1:24280237 Chy02g00808 Chy-Chr2:5048828 4.41E-74 dispersed
Chy06g02069 Chy-Chr6:24887754 Chy01g01900 Chy-Chr1:24280237 1.50E-12 dispersed
Chy06g00051 Chy-Chr6:369239 Chy01g01900 Chy-Chr1:24280237 9.39E-68 transposed
Chy06g02070 Chy-Chr6:24888308 Chy01g01900 Chy-Chr1:24280237 3.67E-45 transposed
Chy01g01900 Chy-Chr1:24280237 Chy04g01312 Chy-Chr4:19636570 1.81E-16 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17368 PF00046 Homeodomain 3.40E-15 CL0123 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g01900 K09338 - csv:101221600 606.29