Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g01930 ATGGCGAAGATCTCAAATCCTTCTCACAACAATTCCATTTCCACTACTACTGACCATGATCCTCACTCTTCTTCTTCTTCTTCTTCCTCAATCCTTCATAGCCAGAGGAAGGTACTGACGAAGCGTACGCGTAAGTCCACTCCTCGTGATTCTCCCGCTCAGCGTAGCTCTATTTACCGCGGAGTCACTAGGCATAGATGGACTGGACGGTTTGAGGCGCATTTGTGGGATAAGAATTGCTGGAATGAAGGACAGAACAAGAAAGGACGTCAAGTGTATTTAGGAGCGTATGATGATGAAGACGCAGCTGCTCATGCTTACGATCTTGCAGCGCTCAAGTACTGGGGAACTGAAACTGTTCTTAACTTTCCACTATTAACGTACCAAGATGAGCTTAAAGAAATGGAAGGTCAATCAAGAGAAGAGTATATTGGATATTTGAGAAGGAAGAGTAGCGGCTTTTCCCGCGGGGTTTCAAAGTACAGAGGCGTAGCAAGGCACCATCATAATGGAAGATGGGAAGCTCGAATTGGCAGAGTGTTTGGCAACAAATACCTTTACCTTGGAACATATGCTACCCAAGAAGAAGCTGCCACGGCTTACGACAAGGCAGCCATAGAATACCGTGGCCTTAACGCCGTTACAAATTTCGACCTCAGCCGTTACATCAAATGCCTTCGTCCGGGGGAACAGAATATCCCAAACACTAACCGTCCACCAAACCCTAACGCCGGCGCAACACCATCAGAATTTGACCCCAATTCCCTCCTCGGATTCACTTTCCCGTCACAATGCTCCAGCTCCGGCCAACCCTCCACCGAGCCACTTCCTGAACCTGGCGACGGCGACTGCTCCTCCTCCTCCATGGCGATCGAGCTCCTTCTCCATTCCTCGAAATTCAAAGACATAATCGAAAGAACGTCCACTGCAGAGACTCCGCCGGAATCTGATCGGCCACGTCGATGTTTTCCTGACGACATTCAAACTTACTTCGATTGTACTCAAGATTCCGGCGATTTTACCGAAGGCGATGACAGCATTTTTGGGTACCTAAATTCGTTTTTACCTTCATCGGTTTTTCACTGCGAACTTGATGCTTAA 1101 47.96 MAKISNPSHNNSISTTTDHDPHSSSSSSSSILHSQRKVLTKRTRKSTPRDSPAQRSSIYRGVTRHRWTGRFEAHLWDKNCWNEGQNKKGRQVYLGAYDDEDAAAHAYDLAALKYWGTETVLNFPLLTYQDELKEMEGQSREEYIGYLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAATAYDKAAIEYRGLNAVTNFDLSRYIKCLRPGEQNIPNTNRPPNPNAGATPSEFDPNSLLGFTFPSQCSSSGQPSTEPLPEPGDGDCSSSSMAIELLLHSSKFKDIIERTSTAETPPESDRPRRCFPDDIQTYFDCTQDSGDFTEGDDSIFGYLNSFLPSSVFHCELDA* 367
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 24516874 24522562 + Chy1G019300.1 Chy01g01930 219111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g01930 366 ProSiteProfiles AP2/ERF domain profile. 160 218 IPR001471 GO:0003700|GO:0006355
Chy01g01930 366 CDD AP2 159 220 IPR001471 GO:0003700|GO:0006355
Chy01g01930 366 SUPERFAMILY DNA-binding domain 57 125 IPR016177 GO:0003677
Chy01g01930 366 ProSiteProfiles AP2/ERF domain profile. 58 124 IPR001471 GO:0003700|GO:0006355
Chy01g01930 366 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 37 351 - -
Chy01g01930 366 Gene3D AP2/ERF domain 159 220 IPR036955 GO:0003700|GO:0006355
Chy01g01930 366 Gene3D AP2/ERF domain 58 126 IPR036955 GO:0003700|GO:0006355
Chy01g01930 366 MobiDBLite consensus disorder prediction 1 36 - -
Chy01g01930 366 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR-RELATED 37 351 - -
Chy01g01930 366 PRINTS Ethylene responsive element binding protein signature 59 70 IPR001471 GO:0003700|GO:0006355
Chy01g01930 366 PRINTS Ethylene responsive element binding protein signature 200 220 IPR001471 GO:0003700|GO:0006355
Chy01g01930 366 Pfam AP2 domain 159 210 IPR001471 GO:0003700|GO:0006355
Chy01g01930 366 Pfam AP2 domain 58 116 IPR001471 GO:0003700|GO:0006355
Chy01g01930 366 SMART rav1_2 58 130 IPR001471 GO:0003700|GO:0006355
Chy01g01930 366 SMART rav1_2 160 224 IPR001471 GO:0003700|GO:0006355
Chy01g01930 366 MobiDBLite consensus disorder prediction 229 285 - -
Chy01g01930 366 MobiDBLite consensus disorder prediction 1 59 - -
Chy01g01930 366 SUPERFAMILY DNA-binding domain 159 220 IPR016177 GO:0003677
Chy01g01930 366 MobiDBLite consensus disorder prediction 230 274 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g01930 Chy-Chr1:24516874 Chy02g02151 Chy-Chr2:25737097 2.97E-138 dispersed
Chy01g01930 Chy-Chr1:24516874 Chy03g00967 Chy-Chr3:13208870 9.97E-101 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17369 PF00847 AP2 2.60E-12 CL0081 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g01930 K09285 - csv:101206499 668.692