Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g01931 ATGATTGGCGACAAGAAATCGATTATACCTCGTCAATCTTCCTATAACTCTTTGTATTTGAATCCCCTCACTGACCTCCGCCACAACCGTAGCTGCAGCGACGGCGGCGGATTCAGGCAAGGTAAAGAGAACTTAACCCCTAATACGAAGGATAAACAGAGAGATGAACCTGCACCTGCAGTGCTTTGCGACAAAGAAAATGCGATTCCTGCTAATGGGTTTTGTGCTAATTCGAAGCAGCAATTTGGGGATTTTAAGTCATTTTCTAATGGGAAGGCTTTGAAGCCTTCTTCACTTCATCTTTGTATGCAAATGAACGAGCCTGATAAGGTTTTTGCATCTAGATTGTGGGATGGAACTGATTCTGAACATTCGAGTTCTTTGAAGATATGGGACTTTTCGGATTCGGAAGCTGCTCCAGCTTCCTCGTGGTCTACTTTGCCTAACAGGTCATTGTTGTGTAGGCCACTGCCTGTGGATGTGGGGAGATGTACTTGTGTCATTGTGAAGGAAAAATCACCAGATGGCCTTCACGGTGGAGCCTTCTATTCTCTATACACAAATGAAGGGAAGGGGCGGCAGGACCGGAAGTTGGCGGTAGCTCGTCATGGACGACGGAAAGGGAGGTCAGAGTATAAAATAGCTCAGAGTGCAAGGGGGATATTGTGCAATGCAGATGATAGTTTTGTTGGATCCATGACTACAAACCTTGTTGGTTCAAAATATTATATATGGGATCAGGGAAGCCGTCTGAAACCGATCCCAACCCAGTCGAGATCGCTTCTGGGTGCTGTAACATTCATGCCGACAATAACCACTTGGACAGGCAGCCATAGGAGCATGAAGGCTTTCATCCCCAAGCATCAATCAATGCAACTGAAAAACACCAATCAGGTGCAGCACATAGCAGGGCTTCCAAGGGAATGGGAGGAAGAAAAAGCCAAAGTTCACCAGCTTGTTTCCAAGGTTCCCCAATACAACAAGATTTCTAAGCAATATGAGTTGGACTTTAGAGACAGAGGAAGGGCAGTTTCAGGTCTTGTGATCCAAACCTCCGTAAAGAATTTTCAGTTAACTTTAGAGGAAAATGGTAAACAAACAATTCTCCAACTTGGAAGGATTGGGAAGTCTAAATATGTGATGGATTATAGAGTGAGAGTTTTGGGCTTTCTTGCAGATATCCACTGA 1188 44.7 MIGDKKSIIPRQSSYNSLYLNPLTDLRHNRSCSDGGGFRQGKENLTPNTKDKQRDEPAPAVLCDKENAIPANGFCANSKQQFGDFKSFSNGKALKPSSLHLCMQMNEPDKVFASRLWDGTDSEHSSSLKIWDFSDSEAAPASSWSTLPNRSLLCRPLPVDVGRCTCVIVKEKSPDGLHGGAFYSLYTNEGKGRQDRKLAVARHGRRKGRSEYKIAQSARGILCNADDSFVGSMTTNLVGSKYYIWDQGSRLKPIPTQSRSLLGAVTFMPTITTWTGSHRSMKAFIPKHQSMQLKNTNQVQHIAGLPREWEEEKAKVHQLVSKVPQYNKISKQYELDFRDRGRAVSGLVIQTSVKNFQLTLEENGKQTILQLGRIGKSKYVMDYRVRVLGFLADIH* 396
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 24525959 24529388 - Chy1G019310.1 Chy01g01931 219112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g01931 395 PANTHER TUBBY-LIKE PROTEIN 8 1 392 - -
Chy01g01931 395 PANTHER TUBBY-RELATED 1 392 - -
Chy01g01931 395 MobiDBLite consensus disorder prediction 31 57 - -
Chy01g01931 395 PRINTS Tubby superfamily signature 344 360 IPR000007 -
Chy01g01931 395 PRINTS Tubby superfamily signature 229 253 IPR000007 -
Chy01g01931 395 PRINTS Tubby superfamily signature 364 383 IPR000007 -
Chy01g01931 395 Pfam Tub family 154 385 IPR000007 -
Chy01g01931 395 Gene3D Tubby Protein; Chain A 149 392 IPR025659 -
Chy01g01931 395 SUPERFAMILY Tubby C-terminal domain-like 141 385 IPR025659 -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17370 PF01167 Tub 2.30E-33 CL0395 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g01931 K19600 - csv:101216780 785.408