Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g01939 ATGGTTTTCGAACATGACAAAGATGGTTTTGGAGACTGGTATGGTTTTCGAGTTTTTGATGATCCAAATGGTGAAGACAAACAATCTTACATAGAGGGGAAAACTCAACTGAAGGTTGAAAGTGAAGCTTGGAAAATGGGGATATATCTCAGCTCCCCCAAAACAGAAAAGGCCTCAGATGATGGTGAGAATGACAGACTTCGATACGGCCTATCCTCTATGCAAGGGTGGCGTGCAACCATGGAAGATGCTCATGCAGCCTGTCTAGATTTGGACACATCAACATCTTTCTTCGGTGTTTACGACGGCCATGGAGGTAAAGCAGTTTCAAAGTTCTGTGCCAAGTATCTTCACCGACAGGTGCTCAAGCATGAATCATACATGGCTGGAGATCTGGGAACTTCTCTGCAGAAGGCCTTTCTCAGAATGGATGAGATGATGCGTGGACAAAGAGGATGGAGAGAATTAGCTATTTTAGGAGACAAAATGGACAAGATTTCTGGTATGATAGAAGGATTTATATGGTCGCCCAAGGGCAATGAAGCTAACAACCAAGTGGATGATTGGCCTCCGGAGGAGGGACCTCACTCTGACTTTCATGGACCAAATGCTGGAAGTACAGCTTGTGTTGTGATCATACGAAATAACCAACTTGTGGTGGCAAATGCTGGTGATTCTCGCTGTGTCATTTCCAGAAAGGGTCAGGCATATAATCTATCTAAAGATCACAAGCCTGATCTTGAGGTTGAGAAGGACAGAATTCTGAAAGCTGGTGGTTTCATCCGAGTTGGTCGAGTCAATGGCAGTCTCAACTTGGCACGGGCTATAGGAGACATGGAATTTAAGCAGAATAAAAGTATGCCCGCAGAAAAGCAGATTGTAACTGCCAATCCAGATATAACAACTGTTGAGCTTTGTGAGGACGACGAATTTCTTGTTCTTGCCTGTGATGGGATCTGGGATTGCATGTCCAGCCAACAACTGGTTGACTACATTGGAGATCAACTAAAATCGGAAAGCAGACTCTCAGTTATTTGTGAGAGAGTATTTGACAGGTGTTTGGCACCCACAGCTGGTGGTGAAGGATGTGACAACATGACTATGATCTTGGTTCAGTTCAAGAAACCCTTCAGCAACCCGGTAAACCTGAATGCTGCTTCTACTTCTGCTGAGGAGCCACCTTCATCGTTCAATCGAACATTGTCTGATCCGAGTGAAAGTGCTTCTAAGACTGAATAG 1239 44.55 MVFEHDKDGFGDWYGFRVFDDPNGEDKQSYIEGKTQLKVESEAWKMGIYLSSPKTEKASDDGENDRLRYGLSSMQGWRATMEDAHAACLDLDTSTSFFGVYDGHGGKAVSKFCAKYLHRQVLKHESYMAGDLGTSLQKAFLRMDEMMRGQRGWRELAILGDKMDKISGMIEGFIWSPKGNEANNQVDDWPPEEGPHSDFHGPNAGSTACVVIIRNNQLVVANAGDSRCVISRKGQAYNLSKDHKPDLEVEKDRILKAGGFIRVGRVNGSLNLARAIGDMEFKQNKSMPAEKQIVTANPDITTVELCEDDEFLVLACDGIWDCMSSQQLVDYIGDQLKSESRLSVICERVFDRCLAPTAGGEGCDNMTMILVQFKKPFSNPVNLNAASTSAEEPPSSFNRTLSDPSESASKTE* 413
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 24635573 24641868 + Chy1G019390.1 Chy01g01939 219120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g01939 412 PANTHER PROTEIN PHOSPHATASE 2C 60 ISOFORM X1-RELATED 43 386 - -
Chy01g01939 412 SMART PP2C_SIG_2 73 373 IPR001932 -
Chy01g01939 412 PANTHER PROTEIN PHOSPHATASE 2C 43 386 IPR015655 GO:0004722|GO:0006470
Chy01g01939 412 Pfam Protein phosphatase 2C 202 358 IPR001932 -
Chy01g01939 412 Pfam Protein phosphatase 2C 68 149 IPR001932 -
Chy01g01939 412 Gene3D - 45 374 IPR036457 -
Chy01g01939 412 MobiDBLite consensus disorder prediction 384 412 - -
Chy01g01939 412 ProSiteProfiles PPM-type phosphatase domain profile. 68 373 IPR001932 -
Chy01g01939 412 SUPERFAMILY PP2C-like 48 374 IPR036457 -
Chy01g01939 412 SMART PP2C_4 58 371 IPR001932 -
Chy01g01939 412 ProSitePatterns PPM-type phosphatase domain signature. 97 105 IPR000222 GO:0043169
Chy01g01939 412 CDD PP2Cc 68 373 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g01939 Chy-Chr1:24635573 Chy05g01245 Chy-Chr5:16855973 1.03E-36 dispersed
Chy06g01185 Chy-Chr6:10603003 Chy01g01939 Chy-Chr1:24635573 3.34E-28 transposed
Chy01g01939 Chy-Chr1:24635573 Chy07g00319 Chy-Chr7:2609705 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g01939 K17499 - csv:101214132 739.569