Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Chy01g01946 | ATGCCAGTTGATACTTCTTCATCTCACCCCTCCACCGTCTGCGTCACCGGCGCCGGTGGCTTCATTGCCTCTTGGATCGTCAAACTCCTCCTCCACAAAGGCTATTTCGTAAGAGGAACCCTCAGAAATCCAGAGGATCCGAAGAACGGGCATTTGAGAGAACTGGAAGGTGCGGAGGAGCGGTTGAGTTTGTATAAAGCCGATCTTCTTGATTTCGAAAGCCTTAAAGCGGCGATCGAGGGGTGCGATGGCGTTTTCCATACGGCGTCGCCTGTGACTGACGATCCGGAGCAAATGGTGGAACCGGCGGTCAACGGCACAAAGAACGTCATAATCGCGGCGGCCGAAGCCAATGTCCGTCGCGTCGTGTTCACTTCCTCCATCGGTGCAGTCTATATGGACCCCAACCGTGGTCCAGACGACATCGTAGACGAGTCCTGTTGGAGCGATCTCGAGTTCTGCAAGAACACAAAGAATTGGTATTGTTATGGTAAAGCTGTGGCGGAGCAGGCGGCATGGGAGGTTGCAAAGGAGAAGGGGGTGGATTTGGTGGTGGTGAATCCAGTGCTGGTGCTAGGGCCATTGTTGCAATCCACCATTAATGCGAGCATAATTCATATACTGAAATACTTGACTGGATCGGCTAAGACTTACGCCAATTCCGTTCAGGCATATGTGCATGTGAAGGATGTGGCTCTTGCTCATATCCTTGTGTACGAGACTCCCTCCGCCGCCGGCCGGTACCTGTGCGCCGAGAGTGTGCTTCATAGAGGGGAGGTTGTTGAGATTCTGGCCAAATTGTTCCCGGAATATCCTGTTCCTACCAAGTGCTCAGATGAAGTGAACCCAAGGAAGAAAGCATACAAGTTCTCAAACAAGAAGCTGAAGGAGTTGGGATTGGAGTTCACTCCAGCAAAGCAGTGTCTATACGACACCGTTAAAAGTTTACAAGAGAAAGGTCACCTCCCAATTCTCACTTCTACTCAACCACCAGATTCCATTCAAATTCAATCTTGA | 1017 | 50.84 | MPVDTSSSHPSTVCVTGAGGFIASWIVKLLLHKGYFVRGTLRNPEDPKNGHLRELEGAEERLSLYKADLLDFESLKAAIEGCDGVFHTASPVTDDPEQMVEPAVNGTKNVIIAAAEANVRRVVFTSSIGAVYMDPNRGPDDIVDESCWSDLEFCKNTKNWYCYGKAVAEQAAWEVAKEKGVDLVVVNPVLVLGPLLQSTINASIIHILKYLTGSAKTYANSVQAYVHVKDVALAHILVYETPSAAGRYLCAESVLHRGEVVEILAKLFPEYPVPTKCSDEVNPRKKAYKFSNKKLKELGLEFTPAKQCLYDTVKSLQEKGHLPILTSTQPPDSIQIQS* | 339 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 24682619 | 24686573 | - | Chy1G019460.1 | Chy01g01946 | 219127 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Chy01g01946 | 338 | PANTHER | NAD DEPENDENT EPIMERASE/DEHYDRATASE | 9 | 326 | - | - | |
| Chy01g01946 | 338 | Pfam | NAD dependent epimerase/dehydratase family | 13 | 244 | IPR001509 | - | |
| Chy01g01946 | 338 | Gene3D | - | 3 | 337 | - | - | |
| Chy01g01946 | 338 | CDD | FR_SDR_e | 13 | 300 | - | - | |
| Chy01g01946 | 338 | PANTHER | CINNAMOYL-COA REDUCTASE-LIKE PROTEIN | 9 | 326 | - | - | |
| Chy01g01946 | 338 | Coils | Coil | 48 | 68 | - | - | |
| Chy01g01946 | 338 | SUPERFAMILY | NAD(P)-binding Rossmann-fold domains | 7 | 317 | IPR036291 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Chy01g01946 | Chy-Chr1:24682619 | Chy04g01345 | Chy-Chr4:20072762 | 0 | dispersed | |
| Chy04g01454 | Chy-Chr4:21170796 | Chy01g01946 | Chy-Chr1:24682619 | 2.83E-33 | dispersed | |
| Chy06g01606 | Chy-Chr6:18526372 | Chy01g01946 | Chy-Chr1:24682619 | 4.87E-28 | transposed | |
| Chy06g01742 | Chy-Chr6:20254014 | Chy01g01946 | Chy-Chr1:24682619 | 7.26E-27 | transposed | |
| Chy07g00424 | Chy-Chr7:3285410 | Chy01g01946 | Chy-Chr1:24682619 | 2.84E-06 | transposed | |
| Chy07g00428 | Chy-Chr7:3303141 | Chy01g01946 | Chy-Chr1:24682619 | 8.95E-58 | transposed | |
| Chy07g00429 | Chy-Chr7:3304802 | Chy01g01946 | Chy-Chr1:24682619 | 3.10E-12 | transposed | |
| Chy08g00745 | Chy-Chr8:15178278 | Chy01g01946 | Chy-Chr1:24682619 | 5.22E-07 | transposed | |
| Chy10g01144 | Chy-Chr10:16366360 | Chy01g01946 | Chy-Chr1:24682619 | 4.05E-73 | transposed | |
| Chy11g00743 | Chy-Chr11:10162749 | Chy01g01946 | Chy-Chr1:24682619 | 4.18E-68 | transposed | |
| Chy12g00332 | Chy-Chr12:3552674 | Chy01g01946 | Chy-Chr1:24682619 | 2.89E-80 | transposed | |
| Chy03g00646 | Chy-Chr3:8984008 | Chy01g01946 | Chy-Chr1:24682619 | 1.04E-09 | transposed | |
| Chy01g01946 | Chy-Chr1:24682619 | Chy04g01344 | Chy-Chr4:20058566 | 3.12E-85 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Chy01g01946 | K09753 | - | csv:101213412 | 659.833 |