Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Chy01g01952 | ATGGCTCGTCCACAACAACGCTATCGTGGCGTTCGCCAACGACATTGGGGCTCTTGGGTCTCTGAAATCCGCCACCCTCTATTGAAGACGAGAATATGGTTAGGAACGTTTGAGACGGCAGAGGATGCAGCTCGAGCTTATGATGAGGCAGCACGGTTGATTTGCGGTCCAAAAGCGCGAACCAACTTTCCGTACAATCTGAACGACCAACAGTCGTCGTCATCATTTTCCTCCTCCTCCAAGCTTCTCTCTGCCGCATTGATAGAGAAATTACATAAATGTCATTTAGCTTCACTCCAAATCGCAAAACAACACGTCCACAAACAACACCCTGGATTTGAGCCGAGCTACCTTGCATACAGTGGATCCCCTCCACCGAGCATTACCGGAGCCACCACTAGTCGATGGACATCAGATGAAACGTGGGTCTATTCCGACAAAGGTGATCAAATGGAGATGAATAACAATAACAATAATTATAATAATAACATTCATCATCAACAATGCCAGCTTGAACCTCTTGAAGATGATCATATCGAACAAATGATACAGGAGCTGCTAGACCTCGGATCATTCGAAATTATCACATAA | 591 | 45.52 | MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLICGPKARTNFPYNLNDQQSSSSFSSSSKLLSAALIEKLHKCHLASLQIAKQHVHKQHPGFEPSYLAYSGSPPPSITGATTSRWTSDETWVYSDKGDQMEMNNNNNNYNNNIHHQQCQLEPLEDDHIEQMIQELLDLGSFEIIT* | 197 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 24725630 | 24726511 | + | Chy1G019520.1 | Chy01g01952 | 219133 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Chy01g01952 | 196 | CDD | AP2 | 6 | 66 | IPR001471 | GO:0003700|GO:0006355 | |
| Chy01g01952 | 196 | ProSiteProfiles | AP2/ERF domain profile. | 7 | 64 | IPR001471 | GO:0003700|GO:0006355 | |
| Chy01g01952 | 196 | SUPERFAMILY | DNA-binding domain | 7 | 66 | IPR016177 | GO:0003677 | |
| Chy01g01952 | 196 | Gene3D | AP2/ERF domain | 6 | 66 | IPR036955 | GO:0003700|GO:0006355 | |
| Chy01g01952 | 196 | PRINTS | Ethylene responsive element binding protein signature | 30 | 46 | IPR001471 | GO:0003700|GO:0006355 | |
| Chy01g01952 | 196 | PRINTS | Ethylene responsive element binding protein signature | 8 | 19 | IPR001471 | GO:0003700|GO:0006355 | |
| Chy01g01952 | 196 | PANTHER | ETHYLENE RESPONSE FACTOR | 1 | 195 | - | - | |
| Chy01g01952 | 196 | Pfam | AP2 domain | 7 | 55 | IPR001471 | GO:0003700|GO:0006355 | |
| Chy01g01952 | 196 | SMART | rav1_2 | 7 | 70 | IPR001471 | GO:0003700|GO:0006355 | |
| Chy01g01952 | 196 | PANTHER | SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR | 1 | 195 | - | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Chy01g01952 | Chy07g01592 | CCT |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Chy01g01952 | Chy-Chr1:24725630 | Chy03g01094 | Chy-Chr3:14341367 | 1.67E-56 | dispersed | |
| Chy01g01952 | Chy-Chr1:24725630 | Chy03g01093 | Chy-Chr3:14334354 | 3.31E-54 | wgd | |
| Chy01g01952 | Chy-Chr1:24725630 | Chy07g00348 | Chy-Chr7:2841084 | 1.21E-60 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 17372 | PF00847 | AP2 | 1.70E-11 | CL0081 | Chy | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Chy01g01952 | - | - | csv:105436189 | 352.829 |