Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g02000 ATGGGGAAGAGACCACCGTCGGTCCACATGGAATCAATGTCCTATGACGTCCACAAGCCCATCTCAATGCCACCGCCACCCAGCTATTATCCTCCCCCGCCCAAACCATGGTTCCCATGGCTGGTGCCTCTCATTTTTCTAGTCAATGTGGGCATGTTTATTTTCACGTTGTATGAAAATAATTGCCCCGCCATCTCTGGAGGAAACCGCTGCCTTCTTTACCCTGAGCTCGGCCGATTCTCCTTCCAACCGTTTCAGGAGAACCCCCTCCTCGGCCCTTCCATCAGCATTTTGAAAAGATATGGGGCTTTGGACAAAGAAGCAGTATTAGAACGTGGAGAAGGTTGGCGCTTGGTGTCTTGTATGTGGCTTCATGCTGGAGTTATTCATTTACTTGCAAATATGCTCAGCCTTCTCTTCATAGGAATTCGCCTCGAACAAGAATTCGGATTTTTGAGAATAGGATGTTTATATGTACTTTCTGGATTTGGTGGGAGTTTACTTTCATCTATAAGTCTCAATCCAGCTGAAAATCCAACCATATCAGTTGGTGCTTCAGGTGCTCTTTTTGGCCTTTTGGGAGCTATGCTATCTGAGCTCATTACAAATTGGACAATTTATGCAAATAAGTGTGCAGCCCTGTTGTCATTGATTCTGATCATTGCCTTAAACCTGGCAGTCGGTTTCATCCCACACGTCGATAATTCCGCTCACATCGGAGGCTTCATTTCGGGTTTTCTCCTTGGTTTCATCCTCTTAATTCGACCGCAATTCGGATACGTTAACCACAAGTACATCCCTGCAGGCTCTGACGTGAAACGTAAATCCAAGCACAAATGCTATCAGTACTTTTTGTTGATTATAGCTCTACTCCTATTGGTTTTCGGATATGTTTCTGGTTTAACAAAGTTGTACAGAACTGATCTACAAGTGACAATGGAAGGTACTTCCCTTCACGGAACGCTTCACGCCACTATCTATGAAATCGACAGGTTGCATACTGGTGGTTCATCCAATGTCTTCAGCATGTTAAGGCAAAACTTTGAGGAGGCTGTCGGAATTGGCAAAGGACAAACCAAACTGTATGCCACTATAGATTTAGAAAAGGCTAGGGTTGGGAGGACACGAATATTGGAATCTGATCCTTCTAATCCAAAATGGAATGAATCTTTTCACATTTACTGTGCCCATAAGGCATCAAATGTTATCTTCACCGTGAAGGATGACAATCCCATTGGTGCAACTTTGATTGGACGTGCATACGTACCTGTGGAAGACATCGTAGACGGGGAGGAAGTTGACAGATGGGTTCCAATCTTAGATGAAAATCAAAATCCTATTGAAGAGGAATCAAAGATTCATGTCAAACTTCAATACTTCAGTGTTACTAAAGATCGCAATTGGGGTCGTGGTATAAGAAGTCGTAAATTTCCTGGAGTCCCTTATACATATTACTCTCAGAGACAAGGTTGTAAGGTCTCTTTGTATCAAGATGCTCATGTCCCCGATAATTTTATTCCTAAAATACCTCTCGCTGGAGGAAAAAATTATGCTCCCGCCAGATGTTGGGAAGATATTTTTGATGCCATAAAAAATGCCAAACACATGATCTACATCACAGGATGGTCTGTTTATACAGAAATTGCCTTGGTAAGGGACTCCAGGAGGCCAAAGCCTGGAGGAGACACCATGCTTGGTGAACTGCTTAAGAGCAAAGCAAGTGAAGGGGTCAGAGTTCTTATGCTTGTCTGGGATGACAGAACATCAGTCGGTTTACTTAAAAAAGATGGTTTGATGGCTACTCACGATGAAGAAACTGAGCGTTACTTCCAAGATACTGACGTGCACTGCGTGTTGTGCCCTCGTAATCCCGATGATGGTGGAAGCATTGTTCAAGATCTACAAATCTCTACCATGTTCACTCATCACCAGAAGATTGTGGTGGTGGATAGCCCAATGCCAAATGGAGATTCGGATAGGAGGAGAATTGTGAGTTTTGTTGGTGGCATTGATCTCTGTGATGGCAGGTATGACACACCCTTTCACTCCCTTTTCAGGACATTGGATACTGCACATCACGACGATTTCCATCAACCAAATTTTACTGGTGCATCAATAACAAAAGGTGGACCGAGGGAACCGTGGCACGATATCCATTCCCGACTTGAAGGCCCCATTGCCTGGGATGTTTTGTTCAATTTTGAGCAAAGGTGGAAGAAACAAGGTGGGAAGGATGTACTTCTACAGCTACGTGATCTTGATGAAATAATTGTTCCTCCATCTCCTGTTATGTACCCAGACGACCATGACACCTGGAACGTTCAGTTGTTTAGATCAATAGATGGTGGGGCAGCTTTTGGCTTTCCTGAGACCCCTGAAGAAGCTGCTAGAGCTGGACTTGTCAGTGGGAAAGATAACATTATTGATAGAAGCATTCAAGACGCATACATTAATGCTATTCGACGGGCTAAGAATTTTATTTATATTGAAAACCAATATTTCCTTGGAAGTTGTTTTGGATGGTCTCCTGATAATATCAAGCCTGAGGATATTGGTGCCTTGCACTGTATCCCAAGAGAGCTTTCCCTCAAGATCGTCAGTAAGATTAAAGCAGGGGAAAGGTTCACTGTGTATGTAGTTGTTCCAATGTGGCCAGAAGGTCTACCAGAAAGTGGATCGGTTCAGGCAATATTAGATTGGCAGAAGAGGACACTAGAAATGATGTATAAAGATGTAATCGAGGCTCTTAGAGATCAAGGTATCGAGGAAGACCCTCGCAACTACTTGACATTCTTCTGTCTTGGCAACCGGGAAGTTAAGAGGTCGGGAGAATATGAACCTTCAGAAGCACCAGAGGAGGATTCTGATTATTTGAGAGCCCAGCAGGCCAGGCGTTTCATGATTTACGTCCACACCAAGATGATGATTGTTGATGATGAGTACATAATTGTTGGATCGGCAAACATCAACCAGAGATCCATGGATGGTGCAAGGGACTCCGAGATAGCAATGGGCGCTTACCAGCCCTATCATCTGTCAGCTCGTGAACCTGCACGTGGTCAAGTTCACGGATTCCGAATGGCTCTTTGGTATGAACATCTTGGTATGCTTGACGAAACTTTCCTTCGTCCAGAAAGTGAAGAATGTGTTGCAAAGGTTAACAGAATTGCTGATAAGTATTGGGATATGTATTCAAGTGAATCACTAGAAAGGGACTTGCCCGGTCACCTCCTCCGCTATCCGATTGGCATAACCAGTGAAGGAGATGTGACAGAACTCCCAGGCTTTGAGTGCTTCCCCGACACCAAAGCTCGTATACTTGGAACCAAATCCGACTACCTCCCTCCCATCCTCACTACCTAA 3363 44.22 MGKRPPSVHMESMSYDVHKPISMPPPPSYYPPPPKPWFPWLVPLIFLVNVGMFIFTLYENNCPAISGGNRCLLYPELGRFSFQPFQENPLLGPSISILKRYGALDKEAVLERGEGWRLVSCMWLHAGVIHLLANMLSLLFIGIRLEQEFGFLRIGCLYVLSGFGGSLLSSISLNPAENPTISVGASGALFGLLGAMLSELITNWTIYANKCAALLSLILIIALNLAVGFIPHVDNSAHIGGFISGFLLGFILLIRPQFGYVNHKYIPAGSDVKRKSKHKCYQYFLLIIALLLLVFGYVSGLTKLYRTDLQVTMEGTSLHGTLHATIYEIDRLHTGGSSNVFSMLRQNFEEAVGIGKGQTKLYATIDLEKARVGRTRILESDPSNPKWNESFHIYCAHKASNVIFTVKDDNPIGATLIGRAYVPVEDIVDGEEVDRWVPILDENQNPIEEESKIHVKLQYFSVTKDRNWGRGIRSRKFPGVPYTYYSQRQGCKVSLYQDAHVPDNFIPKIPLAGGKNYAPARCWEDIFDAIKNAKHMIYITGWSVYTEIALVRDSRRPKPGGDTMLGELLKSKASEGVRVLMLVWDDRTSVGLLKKDGLMATHDEETERYFQDTDVHCVLCPRNPDDGGSIVQDLQISTMFTHHQKIVVVDSPMPNGDSDRRRIVSFVGGIDLCDGRYDTPFHSLFRTLDTAHHDDFHQPNFTGASITKGGPREPWHDIHSRLEGPIAWDVLFNFEQRWKKQGGKDVLLQLRDLDEIIVPPSPVMYPDDHDTWNVQLFRSIDGGAAFGFPETPEEAARAGLVSGKDNIIDRSIQDAYINAIRRAKNFIYIENQYFLGSCFGWSPDNIKPEDIGALHCIPRELSLKIVSKIKAGERFTVYVVVPMWPEGLPESGSVQAILDWQKRTLEMMYKDVIEALRDQGIEEDPRNYLTFFCLGNREVKRSGEYEPSEAPEEDSDYLRAQQARRFMIYVHTKMMIVDDEYIIVGSANINQRSMDGARDSEIAMGAYQPYHLSAREPARGQVHGFRMALWYEHLGMLDETFLRPESEECVAKVNRIADKYWDMYSSESLERDLPGHLLRYPIGITSEGDVTELPGFECFPDTKARILGTKSDYLPPILTT* 1121
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 24975703 24984009 - Chy1G020000.1 Chy01g02000 219181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g02000 1120 SMART pld_4 638 676 IPR001736 GO:0003824
Chy01g02000 1120 SMART pld_4 966 993 IPR001736 GO:0003824
Chy01g02000 1120 CDD PLDc_pPLDalpha_1 513 690 - -
Chy01g02000 1120 Pfam Phospholipase D C terminal 1038 1110 IPR024632 -
Chy01g02000 1120 CDD PLDc_pPLDalpha_2 804 1013 - -
Chy01g02000 1120 Pfam C2 domain 322 439 IPR000008 -
Chy01g02000 1120 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 966 993 IPR001736 GO:0003824
Chy01g02000 1120 Gene3D Endonuclease Chain A 512 752 - -
Chy01g02000 1120 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 638 676 IPR001736 GO:0003824
Chy01g02000 1120 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 318 461 IPR035892 -
Chy01g02000 1120 SUPERFAMILY Phospholipase D/nuclease 463 748 - -
Chy01g02000 1120 Pfam Rhomboid family 111 255 IPR022764 GO:0004252|GO:0016021
Chy01g02000 1120 Gene3D Endonuclease Chain A 790 1010 - -
Chy01g02000 1120 SUPERFAMILY Phospholipase D/nuclease 758 1050 - -
Chy01g02000 1120 SMART C2_3c 321 436 IPR000008 -
Chy01g02000 1120 PANTHER PHOSPHOLIPASE D 318 1120 IPR015679 -
Chy01g02000 1120 PANTHER PHOSPHOLIPASE D 318 1120 - -
Chy01g02000 1120 ProSiteProfiles C2 domain profile. 303 437 IPR000008 -
Chy01g02000 1120 Pfam Phospholipase D Active site motif 638 676 IPR001736 GO:0003824
Chy01g02000 1120 Pfam Phospholipase D Active site motif 967 993 IPR001736 GO:0003824
Chy01g02000 1120 SUPERFAMILY Rhomboid-like 35 257 IPR035952 -
Chy01g02000 1120 Gene3D - 38 255 IPR035952 -
Chy01g02000 1120 CDD C2_plant_PLD 318 460 - -
Chy01g02000 1120 Gene3D C2 domain 319 469 IPR035892 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g02000 Chy-Chr1:24975703 Chy06g01975 Chy-Chr6:23784904 0 dispersed
Chy07g00920 Chy-Chr7:13085335 Chy01g02000 Chy-Chr1:24975703 7.71E-12 dispersed
Chy04g00644 Chy-Chr4:7373189 Chy01g02000 Chy-Chr1:24975703 0 transposed
Chy11g02001 Chy-Chr11:25893372 Chy01g02000 Chy-Chr1:24975703 0 transposed
Chy01g02000 Chy-Chr1:24975703 Chy03g01122 Chy-Chr3:14515013 0 wgd
Chy01g02000 Chy-Chr1:24975703 Chy07g01611 Chy-Chr7:20229345 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g02000 K01115 - csv:101206113 1664.43