Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g02003 ATGACATATTTTCCTGGTTTAAGTAATCAAAGAGACTCCATGTTAGGTGATCAGAAACTTGGTTCTTCTTGCCAAGAACAACAGCCTCTTTGTTCTGGGAATTTGATGATGTTCATGAATCAGGACCCTTCTTGCAGAGATTATTCAGAGATTCTTTCTGGGGTTTCTTCAAATTATGTCGAAACTGTGGGAGATAAAAGTAATGTTGAAATGGCTTTCATTCCACCAGTTGTGGGAATTTTAGATGAATCAAATTTCCAATGTCAAGGTGTTTCACTTAGCCTTTCCACACACTCACCTTCTGTTGTTTCTATGTCCTCATTTCCTCACCAATATCAGACCCCTGCTATGGTTTCTTCATTCATTAATGCACCTCCTTCGATCTTGGAGAAGAGGCCGAATCCGAAACCTTGTATTTCTGATGTGAAAAATGGTATGTATGTAGCATTGGGTTCTGGTTATTCGATGTTGAATTCGGTATACATTGAAGCTGCACAACAGTTGCTCGATGAAATGGTTAGCATCCGGGAAGCTTTGAAAGAGCTGAAGTCTAAGAAACTGAAAGCTTCCAATGGTCTGGGTGTCGATTCCTGCAGAGAAAATGATGGGGGATCTAATGATCTGACTGGGGAGATGTGCGGCAATGCAAGGGAGGCGTCTATCGCTAATCTGTCGAGTGATCTATCGCCTTCCGAACGTCAGGACTTGAAGATCAAAAACTCAAAGCTTTTGTCTTTGTTGGGTGAGGTGGATCGAAGATACAAGCAATATTACCAACAACTGCAAATGTTGGCGTCGTCTTTCAACATGGTAGCAGGTCGAGGGGCTGCAGAGTTCTACACTGCACTCCCACACCAAACAATTTCGTGCCACTTTCGCCGCTTGCAAGATGCAATTAATGCACAGATTGAGGTCACCAGGAGAGCCTTGGGAGAGCAAGATGCTTTACATTCTGGTCAAGAAGGCATTCCCCGTCTCCGCTTTGTCGACCAACACCTCAGGCAACAGAGAGCCCTGCAGCATCTCGGCGTCACGCCACATAGTTGGAGGCCTCAACGAGGGCTTCCTGAAAGCTCCGTGTCGATTCTTCGCGCTTGGCTCTTCGAACATTTCCTCCATCCATATCCCAAGGATTCAGAGAAACTTAAGCTAGCAAGACAAACTGGCCTGACTAGAAACCAAGTCGCAAACTGGTTTATAAATGCACGTGTTCGGCTATGGAAACCAATGGTAGAGGAGATGTACAAAGAAGAATTTGGAGACTCTAACATTGATATCAAATCCTCACCAGAAAATGCATCCAAAGCATCATGGAACAATTCGCTATTCTCTGAAGATAGGGGAGGAGACGAGTTGCACGACAGCACAAAATTTGTAGCAAACAACGGTGAGCGAGTCCTCTATCGCCAGTGTGCTACAGACGATATGATCAACTCGAGTAACTTCACAATGGGAGGAGGAGATGTTTCACTTGCATTGGAGTTGAAGCATTGTGAAGGTGATGAATTTGGTATGTTTGGGAATAATAACAATAGAATGGTTGGTTCTATGGAGCTTGAGGGACAGGATTTTCCATGTCTGGAACCAGAAAGGCATCATCAATGCAGACTCACCAGTTCAAATATGTTGCATGATTTTGTAGTTTAA 1647 43.96 MTYFPGLSNQRDSMLGDQKLGSSCQEQQPLCSGNLMMFMNQDPSCRDYSEILSGVSSNYVETVGDKSNVEMAFIPPVVGILDESNFQCQGVSLSLSTHSPSVVSMSSFPHQYQTPAMVSSFINAPPSILEKRPNPKPCISDVKNGMYVALGSGYSMLNSVYIEAAQQLLDEMVSIREALKELKSKKLKASNGLGVDSCRENDGGSNDLTGEMCGNAREASIANLSSDLSPSERQDLKIKNSKLLSLLGEVDRRYKQYYQQLQMLASSFNMVAGRGAAEFYTALPHQTISCHFRRLQDAINAQIEVTRRALGEQDALHSGQEGIPRLRFVDQHLRQQRALQHLGVTPHSWRPQRGLPESSVSILRAWLFEHFLHPYPKDSEKLKLARQTGLTRNQVANWFINARVRLWKPMVEEMYKEEFGDSNIDIKSSPENASKASWNNSLFSEDRGGDELHDSTKFVANNGERVLYRQCATDDMINSSNFTMGGGDVSLALELKHCEGDEFGMFGNNNNRMVGSMELEGQDFPCLEPERHHQCRLTSSNMLHDFVV* 549
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 24997152 24999279 - Chy1G020030.1 Chy01g02003 219184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g02003 548 SMART prehox3 150 301 IPR006563 -
Chy01g02003 548 CDD homeodomain 349 410 IPR001356 GO:0003677
Chy01g02003 548 SUPERFAMILY Homeodomain-like 350 416 IPR009057 -
Chy01g02003 548 Pfam Homeobox KN domain 366 405 IPR008422 GO:0003677|GO:0006355
Chy01g02003 548 Gene3D - 346 423 - -
Chy01g02003 548 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 18 458 - -
Chy01g02003 548 Pfam Associated with HOX 157 299 IPR006563 -
Chy01g02003 548 ProSiteProfiles 'Homeobox' domain profile. 346 409 IPR001356 GO:0003677
Chy01g02003 548 Coils Coil 162 185 - -
Chy01g02003 548 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 10 18 458 - -
Chy01g02003 548 SMART HOX_1 349 413 IPR001356 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g02003 Chy-Chr1:24997152 Chy11g00350 Chy-Chr11:3195879 7.86E-103 dispersed
Chy01g02003 Chy-Chr1:24997152 Chy04g01857 Chy-Chr4:24758171 1.33E-85 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17375 PF07526 POX 5.10E-37 No_clan Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g02003 - - csv:101222692 1052.35