Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g02038 ATGAGAAAAGAAGAAAATCATACCAGGGCTAATATTGGAGAATTCCCTGGTAGAATTACACGTGCTCGGGCTGCTGCATTTACTGCATCAGCGCAGCTGCCTCCTAAAGTTCCTGCACATCAACATGAGAGACGGGTTGCACGAGCTAATCTGAAAAGAGCCGCTTCTGAAGAAAATAGCTGCAATTCTATTGCTAAATCGTCTCGACCATGTAAAAGGAGGGCTGTACTTCAGGATGTCAGCAATATAGGCTGTGAACCTTCGTACTCAAATTGTTTCAATGCAGCTAAAATTGAGCCCAATACTAGGAAGACAACAATCAGAAATTATCTCAAGAAGTCCAAAGGAGCCTCATCAGTTGGTGTGGTTAACTCCAAGGTTTCTCTAGGTCCTAAAAACAAAGGAGCTTCATCAGTTGGTGCCGCTTACTCCAAGCCTCTTGATCTTAGAACAGAAGGTGTACAAGCAAATGTCAAGTCAAAAGCTAAGTTGAAAGTTGAGCTTTCAAGTAATTCTGAAGACCACAAGACACATCATCGAGTAGAGGGTGTAAAGGAAGAGGTCACAAGTGATTTTCGGGATGATAATTGGAGGTCTCAGAGTCATTCAGAGTCTCAAAATTTTCAAAATAAAGAGAAAGGGTTGCTTCTGGGGACTAGAAGCAACCTGGACATTACAGACATTGATTGTAATGACAGAGATGCTCAGCTGTGCACCGTCTATGCACAGGAAATCTATAACAATTTACGTGTTGCTGAGCTAACCAGAAGACCACGTCCCAGTTTCATGGAAACAGTGCAGACTGATATTACCCAAAGCATGCGGGGTATATTGGTTGATTGGCTTGTAGAGGTATCTGAGGAATACAAGTTAGTACCAGATACACTCTACCTAACTGTTTTTTTCATCGATTGGTTTCTCTCCCAAAATTACATCGAAAGACAAAAGCTTCAATTGTTGGGTATCTCTTGCATGTTAATTGCCTCGAAGTATGAAGAAATTTGTGCACCACGTGTTGAAGACTTTTGTTTCATCACTGACAGCACCTACACAAAAGAGGAGGTATTGAATATGGAAGGTCAAATATTGAAGCACATGGGCTTTCAACTTTCTGCACCAACTGCAAAATCTTTCCTCAGGAGATATGTTCGAGCTGCACAAACGACATATAAGACCCCAAGTCTTGAACTCGAGTGCCTCGCCAACTATCTAGCCGAATTAACACTAGTTGACTATGGTTTCTTGAATTTTCTTCCGTCAGTTATAGCTGCATCAGCTGTATTTCTATCCAAATGGACGTTGGATCAGTCAAGTCACCCATGGAATTCAACACTGGAATATTATACCTCATACAAAGCATCAGATCTGAAACAAACTGTTGTTGCTTTACAAGATTTACAGTTGAACACCAACGGTTGCCCTCTTAGTTCGATTCGCGTCAAGTATCGGCAAGAGAAGTTCTGTGACTTTGGTCATGTTCCTCCCGAATTGATCTCGTGCCGGGCAGAGATTGACCGTTGA 1521 42.01 MRKEENHTRANIGEFPGRITRARAAAFTASAQLPPKVPAHQHERRVARANLKRAASEENSCNSIAKSSRPCKRRAVLQDVSNIGCEPSYSNCFNAAKIEPNTRKTTIRNYLKKSKGASSVGVVNSKVSLGPKNKGASSVGAAYSKPLDLRTEGVQANVKSKAKLKVELSSNSEDHKTHHRVEGVKEEVTSDFRDDNWRSQSHSESQNFQNKEKGLLLGTRSNLDITDIDCNDRDAQLCTVYAQEIYNNLRVAELTRRPRPSFMETVQTDITQSMRGILVDWLVEVSEEYKLVPDTLYLTVFFIDWFLSQNYIERQKLQLLGISCMLIASKYEEICAPRVEDFCFITDSTYTKEEVLNMEGQILKHMGFQLSAPTAKSFLRRYVRAAQTTYKTPSLELECLANYLAELTLVDYGFLNFLPSVIAASAVFLSKWTLDQSSHPWNSTLEYYTSYKASDLKQTVVALQDLQLNTNGCPLSSIRVKYRQEKFCDFGHVPPELISCRAEIDR* 507
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 25216266 25221079 - Chy1G020380.1 Chy01g02038 219219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g02038 506 CDD CYCLIN 373 460 IPR013763 -
Chy01g02038 506 Pfam Cyclin, N-terminal domain 244 370 IPR006671 -
Chy01g02038 506 Gene3D - 244 488 - -
Chy01g02038 506 Gene3D - 258 371 - -
Chy01g02038 506 SMART cyclin_7 377 465 IPR013763 -
Chy01g02038 506 SMART cyclin_7 280 364 IPR013763 -
Chy01g02038 506 Coils Coil 39 59 - -
Chy01g02038 506 CDD CYCLIN 274 363 IPR013763 -
Chy01g02038 506 Pfam Cyclin, C-terminal domain 373 488 IPR004367 -
Chy01g02038 506 SUPERFAMILY Cyclin-like 234 370 IPR036915 -
Chy01g02038 506 SUPERFAMILY Cyclin-like 373 494 IPR036915 -
Chy01g02038 506 PIRSF Cyclin_A_B_D_E 33 504 IPR039361 -
Chy01g02038 506 PANTHER CYCLIN-A2-4 51 486 - -
Chy01g02038 506 PANTHER CYCLINS 51 486 IPR039361 -
Chy01g02038 506 SMART Cyclin_C_2 373 496 IPR004367 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00109 Chy-Chr1:706935 Chy01g02038 Chy-Chr1:25216266 7.55E-72 dispersed
Chy01g02038 Chy-Chr1:25216266 Chy04g00342 Chy-Chr4:3059342 8.48E-132 dispersed
Chy01g02038 Chy-Chr1:25216266 Chy03g01169 Chy-Chr3:14889634 2.08E-113 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g02038 K06627 - csv:101222299 955.281