Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g02068 ATGGATTTCTGGCCAGAATTTCTTGCAAGCAGTTGGGGTAGAGAATTTGTTGCCGGTGGATTTGGTGGCATCGCCGGCGTAATCTCCGGCTACCCTCTTGATACTCTTAGAATAATGCAACAACAATCGATATCTGGTTCTGCTTTGAAAATCTTTCGGAATATCATTGTTAACGATGGCCCTGCTGGTCTTTTCAGAGGAATGGCTGCTCCTTTGGCCTCTGTCACTTTTCAGAACGCCGCCGTGTTTCAGATCTATGCCGTTCTTTCTCGGGCATTCAACTCCTCCTCTCAATCCAAAATTGGAGACCCTCCAAGTTATAAGGCTGTGTCATTTGCAGGAGTTGGTACTGGAGCTCTTCAGAGCTTCATCTTGTCGCCGGTGGAGCTTGTGAAGATCCGCCTGCAATTGCAGAGTTCAAGCCATGCAATTTCTTCTTCTTCTTCTTCTCCTCATAGAGGTCCATTGAGCGTCACCAAGAGCATCTACAAAACAGAAGGATTGAGAGGGATTTACAAAGGACTTACCATAACCATACTGAGAGATGCACCTGCACATGGCATCTATTTCTGGACATACGAGTGCATGAGAGAGCATTTTCATCCTGGCTGCCGAAAGACCAGCCAAGAGAGCGTCGGAACAATGCTGGTCGCCGGAGGGCTTGCTGGAGTTGCTAGCTGGGTTTTTTGTTATCCACTGGATGTATTGAAGACAAGAATTCAGGGTCAAACAAAAAGTTCATCTCGAAAGTACAATGGAATTGTGGATTGTCTTAGCAAAAGTGTAAGAGAAGAGGGTTATAGAGTGCTATGGCGTGGACTAGGGACAGCAGTTGCCAGAGCATTTGTGGTAAATGGGGCCATTTTTGCTGCTTATGAGATAACTTTGAGGTGTTTGTTTAGCAATGGAAGCAATCATACACAGCAATATGATTGCCCAAATTTGTCACAATCACAGAGTCCTAAAAAGAAATGA 975 45.23 MDFWPEFLASSWGREFVAGGFGGIAGVISGYPLDTLRIMQQQSISGSALKIFRNIIVNDGPAGLFRGMAAPLASVTFQNAAVFQIYAVLSRAFNSSSQSKIGDPPSYKAVSFAGVGTGALQSFILSPVELVKIRLQLQSSSHAISSSSSSPHRGPLSVTKSIYKTEGLRGIYKGLTITILRDAPAHGIYFWTYECMREHFHPGCRKTSQESVGTMLVAGGLAGVASWVFCYPLDVLKTRIQGQTKSSSRKYNGIVDCLSKSVREEGYRVLWRGLGTAVARAFVVNGAIFAAYEITLRCLFSNGSNHTQQYDCPNLSQSQSPKKK* 325
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 25492504 25493588 + Chy1G020680.1 Chy01g02068 219249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g02068 324 Pfam Mitochondrial carrier protein 11 96 IPR018108 -
Chy01g02068 324 Pfam Mitochondrial carrier protein 111 200 IPR018108 -
Chy01g02068 324 Pfam Mitochondrial carrier protein 210 301 IPR018108 -
Chy01g02068 324 ProSiteProfiles Solute carrier (Solcar) repeat profile. 105 199 IPR018108 -
Chy01g02068 324 ProSiteProfiles Solute carrier (Solcar) repeat profile. 10 92 IPR018108 -
Chy01g02068 324 PANTHER CARNITINE/ACYLCARNITINE CARRIER-LIKE PROTEIN 1 301 - -
Chy01g02068 324 SUPERFAMILY Mitochondrial carrier 12 293 IPR023395 -
Chy01g02068 324 Gene3D Mitochondrial carrier domain 109 319 IPR023395 -
Chy01g02068 324 Gene3D Mitochondrial carrier domain 3 108 IPR023395 -
Chy01g02068 324 ProSiteProfiles Solute carrier (Solcar) repeat profile. 210 298 IPR018108 -
Chy01g02068 324 PANTHER MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED 1 301 - -
Chy01g02068 324 PRINTS Mitochondrial carrier protein signature 15 28 IPR002067 GO:0055085
Chy01g02068 324 PRINTS Mitochondrial carrier protein signature 172 190 IPR002067 GO:0055085
Chy01g02068 324 PRINTS Mitochondrial carrier protein signature 28 42 IPR002067 GO:0055085
Chy01g02068 324 PRINTS Mitochondrial carrier protein signature 219 241 IPR002067 GO:0055085
Chy01g02068 324 PRINTS Mitochondrial carrier protein signature 120 138 IPR002067 GO:0055085
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g02068 Chy-Chr1:25492504 Chy04g00086 Chy-Chr4:865893 4.83E-10 dispersed
Chy10g01268 Chy-Chr10:17221566 Chy01g02068 Chy-Chr1:25492504 8.86E-06 transposed
Chy01g02068 Chy-Chr1:25492504 Chy04g01144 Chy-Chr4:17572895 9.97E-152 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g02068 K15109 - csv:101222165 608.986