Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g02083 ATGGATGTGGAAGCGGACACCACGGGAAGAAGGGAGGATAGCTGTAGTGACAATTCGGAGCCGGCGGGATCGAGGTCGGCGGAGGATTTGGGGGTAGACCCGGATGATGAAGATGAAGATAAGTTGCAGGGGAATACGAAGAAGAGGAAGAATCGTCATACTTCGGAGCAAATCAGAGAAATGGAAATGTTGTTTAAAGAATCACCTCATCCAGATGAGAAACAACGGCAACAACTGAGTGAGAAACTTGGTCTTTCTTGTAAACAAATCAAGTTCTGGTTTCAGAATCGTCGAACCCAAATCAAGGCTATTCACGAGCGTCATGAAAACGCTTTATTAAAAGGAGAAATGGAGAAATTACGAGAGGAAAATCAAGCGATGAGAGAAATGATAAGTAAATCTTCATGCCCTAAAGGTTGTTGTTCTGCTTCAACTAATTCCCTAGACCCAATTTTCACCACTTCTGATCAACAACAACAGCAACTAGTAACTGAAATTGCTCGACTCAAAGCCGAGGTGGAGAGATTAAGAACAGCTCTGGATAAATACGCGCCGGCGGGGACAGAGAACAGCAAGGAGGAAGGAGGAATAGAGAGGCCGGGGAGGAATTTGGAGAAATCGAAGAGTATATTCGGATTGGAGAAAGGTAGAGTTATGTTGATAGGGAAGAGAGCGATAGAGGAGGTGGTGAAAATGGGGGATTCCGATGAGCCACTGTGGGTGAGAAGCGTTGAAACAGGAAGAGAGCTATTGAATTACGATGTGTATATGAAGGAATTGGCGGTGGGAAATGAGAGAGGGAAGAGAGAAGTGGAAGCGTCGAGAGAAACGGGTGTGGTGTTCGCTGATCTTCATCGATTGGTTCAGAGCTTCATGGATGTGGTTCAATGGAAGGAAATGTTTCCGTCGATGATCTCGAAGGCGTCGACTATGGAGGTCGTCTTCAATGGCGACGGTAACAACAGAGATGGTGCAGTTCAACTGATGTTTGCAGAGCTCCAAATGCTGACCCCAACCATCCCTCCAAGAGAGATTTTTTTCATTCGAAGTTGCAAGCAACTAAGCCCCGGTAAGTGGGTCGTTGCTGATGTCTCCATCGACAAAGTCGGAGACCATGTCGACTCTTCTTCCTCTCGTTGTAGGAAACGCCCCTCTGGTTGCATCATCCAAGACCAATCTGACGGTCATTGTAAGGTCACATGGGTCGAACATTGGGAATGTCACAAGATTGGACTTCACACCATATACCGAACCATCGTCAATAGCGGTTTGATATTCGGAGCAATGCATTGGATGTCCACGCTTCAAATGCATTGTGAGTGGCAGGTTTTCTTCATGGCCACCAACGTTCCCATGAAGGATTCCACTGGAATCACCACTGTTGGTGGGAGAAAAAATGTTCTTCGATTAGCTCAGAGAATGACCTCTAGTATTTATCAAGCCATCGGTGCTTCCAGCAGCCATACATGGACCAAGGTTCAGAGCAAATTAGGTGAAACCATTCGGATTGCTTCCAGGAAGAACCTGAAAAACCCACATGAACCTACTGGTTTGATCTTGTGTGCAGTTGCTTCTGTTTGGCTACCTGTTTCCCCTAAACTCTTGTTCGAATTCTTGATCGATGAAGCTCGCCGACCCGAGTGGGATGTAATGTTAAGTGGCGGTCAAGCAGAAATGTTAGCAAACTTCGCCAAAGGACAAAATCGAGGCAATGCGGTCACTATCCAAGCAGTAAAATCAGACGAAACCAACAAGTGGATTCTACAAGATAGTCTAACAAACGAATACGAATCAACAGTTGTCTATGCTCAAGTTGACATGAATAGTATGAAGTCTGTAATGGCCGGGTTCGACTCAGGCAACATCACGACGTTACCGACAGGGTTCTCAATCCTTCCAGATGGCCACCCAACAAGGCCATTGGTTATCAGTTCTAGCAAAGAAGAGAGGGAAACAAGAGGAGGCTCATTGCTAACAGTAGCATCTCAAATCCTAGTGAGTCCCTCTCCAACAGCCGAAACAACGTCACAGTCGGTCGACTATGTTAACAATATTATGTCACATACTTTAGAAAATATTAAAGCAAGCCTACAAGGTGAAGATGATTGA 2109 45.61 MDVEADTTGRREDSCSDNSEPAGSRSAEDLGVDPDDEDEDKLQGNTKKRKNRHTSEQIREMEMLFKESPHPDEKQRQQLSEKLGLSCKQIKFWFQNRRTQIKAIHERHENALLKGEMEKLREENQAMREMISKSSCPKGCCSASTNSLDPIFTTSDQQQQQLVTEIARLKAEVERLRTALDKYAPAGTENSKEEGGIERPGRNLEKSKSIFGLEKGRVMLIGKRAIEEVVKMGDSDEPLWVRSVETGRELLNYDVYMKELAVGNERGKREVEASRETGVVFADLHRLVQSFMDVVQWKEMFPSMISKASTMEVVFNGDGNNRDGAVQLMFAELQMLTPTIPPREIFFIRSCKQLSPGKWVVADVSIDKVGDHVDSSSSRCRKRPSGCIIQDQSDGHCKVTWVEHWECHKIGLHTIYRTIVNSGLIFGAMHWMSTLQMHCEWQVFFMATNVPMKDSTGITTVGGRKNVLRLAQRMTSSIYQAIGASSSHTWTKVQSKLGETIRIASRKNLKNPHEPTGLILCAVASVWLPVSPKLLFEFLIDEARRPEWDVMLSGGQAEMLANFAKGQNRGNAVTIQAVKSDETNKWILQDSLTNEYESTVVYAQVDMNSMKSVMAGFDSGNITTLPTGFSILPDGHPTRPLVISSSKEERETRGGSLLTVASQILVSPSPTAETTSQSVDYVNNIMSHTLENIKASLQGEDD* 703
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 25557411 25561729 - Chy1G020830.1 Chy01g02083 219264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g02083 702 MobiDBLite consensus disorder prediction 1 57 - -
Chy01g02083 702 SMART HOX_1 46 108 IPR001356 GO:0003677
Chy01g02083 702 Pfam Homeodomain 47 102 IPR001356 GO:0003677
Chy01g02083 702 CDD homeodomain 47 102 IPR001356 GO:0003677
Chy01g02083 702 Coils Coil 159 179 - -
Chy01g02083 702 SUPERFAMILY Homeodomain-like 36 103 IPR009057 -
Chy01g02083 702 MobiDBLite consensus disorder prediction 1 18 - -
Chy01g02083 702 SUPERFAMILY Bet v1-like 484 689 - -
Chy01g02083 702 ProSiteProfiles START domain profile. 211 444 IPR002913 GO:0008289
Chy01g02083 702 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 11 700 IPR042160 -
Chy01g02083 702 Coils Coil 103 130 - -
Chy01g02083 702 Pfam START domain 224 440 IPR002913 GO:0008289
Chy01g02083 702 ProSitePatterns 'Homeobox' domain signature. 79 102 IPR017970 GO:0000981|GO:0006355
Chy01g02083 702 SUPERFAMILY Bet v1-like 217 440 - -
Chy01g02083 702 MobiDBLite consensus disorder prediction 40 57 - -
Chy01g02083 702 SMART START_1 220 441 IPR002913 GO:0008289
Chy01g02083 702 ProSiteProfiles 'Homeobox' domain profile. 44 104 IPR001356 GO:0003677
Chy01g02083 702 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN GLABRA 2 11 700 - -
Chy01g02083 702 Gene3D - 220 443 IPR023393 -
Chy01g02083 702 CDD START_ArGLABRA2_like 215 440 - -
Chy01g02083 702 Gene3D - 34 115 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g02083 Chy-Chr1:25557411 Chy04g00924 Chy-Chr4:13249200 0 dispersed
Chy01g02083 Chy-Chr1:25557411 Chy11g02014 Chy-Chr11:25991815 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17380 PF01852 START 2.00E-49 CL0209 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g02083 K09338 - csv:101218545 1375.15