Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g02089 ATGGCGTGGTTCACCATTGGAAGCTTTCAAGATTCCTTGAGCTTACGCTCTTTCAAGGCTTATCTAGCCGAGTTCATCTCCACCTTACTCTTCGTTTTCGCCGGTGTCGGCTCCGCCATTGCCTACAATAAAATAACATCATCTGGAGCTTTAGATCCAGCAGGGCTGGTTGGGGTGGCAGTTTGCCATGGATTTGCTCTGTTTGTTGCGGTCTCCGTCGGAGCTAACATCTCCGGTGGCCACGTGAACCCAGCGGTGACGTTCGGGCTTCTTCTTGGAGATCAAATCAGCCTAATTACCACCATTTTCTACTGGACTGCTCAGCTTCTTGGCTCCATTGTCGCCTGCTACCTTCTCAAATATGTCACTGGCGGCCTTGCGGTTCCGGTCCACAGCGTCGCCGCCGGCGTCGGAGCGGCGGAAGGGGTAGTGACGGAGATTGTCACCACCTTCGGTTTGGTTTACACTGTCTATGCGACTGCGGCAGACCCAAAGAAGGGATCTTTGGGCACAATTGCGCCGATTGCCATCGGTTTAATCGTCGGAGCAAACATCTTGGCAGCCGGACCGTTTACCGGTGGATCGATGAACCCGGCCCGATCTTTCGGCCCAGCGGTAGTCAGTGGCGATTTTCACGATAACTGGATTTACTGGGTTGGGCCGCTCGTTGGCGGTGGCTTAGCTGGGCTTATCTACTTTTACGCCTTTATGGCCTATGGGCCCAGCCCAATTCCAAACGATTTCTAA 747 53.68 MAWFTIGSFQDSLSLRSFKAYLAEFISTLLFVFAGVGSAIAYNKITSSGALDPAGLVGVAVCHGFALFVAVSVGANISGGHVNPAVTFGLLLGDQISLITTIFYWTAQLLGSIVACYLLKYVTGGLAVPVHSVAAGVGAAEGVVTEIVTTFGLVYTVYATAADPKKGSLGTIAPIAIGLIVGANILAAGPFTGGSMNPARSFGPAVVSGDFHDNWIYWVGPLVGGGLAGLIYFYAFMAYGPSPIPNDF* 249
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 25623948 25625037 + Chy1G020890.1 Chy01g02089 219270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g02089 248 SUPERFAMILY Aquaporin-like 14 242 IPR023271 -
Chy01g02089 248 Gene3D Glycerol uptake facilitator protein. 2 240 IPR023271 -
Chy01g02089 248 TIGRFAM MIP: MIP family channel proteins 23 232 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy01g02089 248 PANTHER AQUAPORIN-8 1 248 IPR034294 -
Chy01g02089 248 PRINTS Major intrinsic protein family signature 63 87 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy01g02089 248 PRINTS Major intrinsic protein family signature 145 163 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy01g02089 248 PRINTS Major intrinsic protein family signature 215 235 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy01g02089 248 PRINTS Major intrinsic protein family signature 100 119 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy01g02089 248 PRINTS Major intrinsic protein family signature 19 38 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy01g02089 248 PRINTS Major intrinsic protein family signature 178 200 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy01g02089 248 Pfam Major intrinsic protein 14 232 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy01g02089 248 CDD MIP 19 232 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy01g02089 248 ProSitePatterns MIP family signature. 81 89 IPR022357 -
Chy01g02089 248 PANTHER MIP PROTEIN 1 248 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g02089 Chy-Chr1:25623948 Chy09g01079 Chy-Chr9:13139000 4.63E-116 dispersed
Chy09g01364 Chy-Chr9:15482715 Chy01g02089 Chy-Chr1:25623948 2.06E-33 dispersed
Chy09g01365 Chy-Chr9:15487902 Chy01g02089 Chy-Chr1:25623948 4.97E-29 dispersed
Chy01g02089 Chy-Chr1:25623948 Chy04g02024 Chy-Chr4:25910361 3.29E-91 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g02089 K09873 - csv:101218611 457.603