Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g02093 ATGGCAAAACCAAAGAATTCAAATCCCCAGAACAAAACCACCCCTCTTCCCACTACTCCGGCCGGCAAAAGACCAAGAGACTGCAACAAACACCCTGTTTTCCGAGGCGTACGGAAGCGGAGCTGGGGGAAATGGGTATCGGAAATCCGGCAACCCCGTAAGAATTCCCGAATTTGGCTCGGTACTTTTCCAACTCCGGAGATGGCGGCACGTGCTCACGATGCCGCCGCTTTATGCATCAAAGGCGACTCTGCCATCCTCAATTACCCTGAACTTGCTGACTTTTTGCCTAGACCGGCGTCGCTCATGCCGCAGGATGTTCAGGCTGCTGCCGCCAAAGCTGCAGCGATGGTCCATTTGAACTCCGCTGCATTGCCGTCCGAGGAGGAGGATCTGAGTGAGATCGTCGAGTTGCCGAATATAGAAGTCGATTTTTGTACTGAGTCGTTGAACGAGTTCAAATTGGTTACTGAGTCATGGGAATGGTGGGAGTCCGTGGCAATGCCCTTGGCGGCGGAATTCGGTTCCGGTTATTTTTCCGGCCAAACGACGGCGGAGGAAATTTGTTACCCGAGCAGTTTTTACGGCGTTCTTTGGGATTAA 603 52.74 MAKPKNSNPQNKTTPLPTTPAGKRPRDCNKHPVFRGVRKRSWGKWVSEIRQPRKNSRIWLGTFPTPEMAARAHDAAALCIKGDSAILNYPELADFLPRPASLMPQDVQAAAAKAAAMVHLNSAALPSEEEDLSEIVELPNIEVDFCTESLNEFKLVTESWEWWESVAMPLAAEFGSGYFSGQTTAEEICYPSSFYGVLWD* 201
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 25646299 25646901 + Chy1G020930.1 Chy01g02093 219274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g02093 200 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 5 121 - -
Chy01g02093 200 Gene3D AP2/ERF domain 33 91 IPR036955 GO:0003700|GO:0006355
Chy01g02093 200 ProSiteProfiles AP2/ERF domain profile. 33 90 IPR001471 GO:0003700|GO:0006355
Chy01g02093 200 CDD AP2 34 92 IPR001471 GO:0003700|GO:0006355
Chy01g02093 200 MobiDBLite consensus disorder prediction 1 31 - -
Chy01g02093 200 PRINTS Ethylene responsive element binding protein signature 34 45 IPR001471 GO:0003700|GO:0006355
Chy01g02093 200 PRINTS Ethylene responsive element binding protein signature 56 72 IPR001471 GO:0003700|GO:0006355
Chy01g02093 200 Pfam AP2 domain 32 82 IPR001471 GO:0003700|GO:0006355
Chy01g02093 200 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 3-LIKE 5 121 - -
Chy01g02093 200 SUPERFAMILY DNA-binding domain 33 90 IPR016177 GO:0003677
Chy01g02093 200 SMART rav1_2 33 96 IPR001471 GO:0003700|GO:0006355
Chy01g02093 200 MobiDBLite consensus disorder prediction 1 18 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g02093 Chy-Chr1:25646299 Chy04g00939 Chy-Chr4:13509679 1.07E-54 dispersed
Chy01g02093 Chy-Chr1:25646299 Chy05g01389 Chy-Chr5:17949100 1.17E-43 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17382 PF00847 AP2 6.50E-15 CL0081 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g02093 K09286 - csv:101217361 396.741