Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g02096 ATGTGGAGGTTAAAGGTAGCCGATGGCGGAAATGATCCTTACATCTATTCTATGAACAACTTTGTCGGAAGGCAAATATGGGAATTCGACCCAAATGCTGGTACTCCAGAAGAACGAGAAGAAGTTGAATGCGTTCGGAACGAATTCACTGCAAATCGTCTCAAGGGTTTACCTAGTGCAGACTTGCTTTGGCGTCTTCAGCTTTTGAGAGAGAGAAATTTCAAACAAAGCATACCACCGGTGAAGATCGAAGAAGGGGAAGAAATGAGTTACGAGAAGGCATGGGACGCAATGAGAAGAGGGGCGCACTTTCTAGCGGCCATACAAGCGAGTGATGGGCATTGGCCCAGTGAAACATCTGGCCCATTGTTCTACAACTGTCCATTGTTAATTTGTATGTACATAATGGGGTTTTTAGATGCTGCTTTCCCTCCCGAGCATAAGAAAGAAATGAAACGTTACATTTACAACCATCAGAACGAAGATGGTGGATGGGGGTTACACGTTGGTGGTCATAGTAATATGTTTTGCACTACCTTCAATTACATCTCTTTGCGTTTACTTGGGGAAGGACCTGATGTTGAGCCGGTTTCTAGGGGTAGAAATTGGGTCCATGAACATGGCGGTGTTACCTCGATCCTTTCGTGGGGAAAGACATGGCTATCGATATTGAACTTGTTCGATTGGTCTGCAAGTAACCCCATGCCTCCGGAGTATTGGATGTTTCCCACTTGGGTCCCCATTCATCCATCAAACATGATGTGCTACACTCGAATCACCTACATGCCCATGTCATATTTGTATGGAAAAAGGTTTCAAGCTCCTTTAACGCCTCTTGTCTTACAATTAAGAGAAGAACTCCACACCGAACCCTACGACAAAATTAATTGGAAAAAAGTTCGCCACATGTGTGCTACGGAAGACTTATATTTTCCACATCCCTTCGTCCAAGACTTGCTTTGGGATACTCTTTATTTGTTGAGTGAGCCATTGATGACTCGATGGCCTTTTAACAAATTGATTCGCCAAAAAGCCCTCGACGATACCATGAAACATATTCATTACGAGGACGAAAATAGTCGTTACATTACCATTGGTTGCGTCGAAAAGCCATTATGCATGCTTGCTTGTTGGGTTGAAGATCCAAATAGTGACTATGTGAAGAAGCACTTTGCAAGAATTCCAGATTATTTATGGATGGCTGAAGATGGAATGAAAATGCAAAGTTTTGGTAGCCAATCATGGGATGCTGCTTTAGCCATGCAAGCTCTTCTTGCTTGTAATATTCCCCAAGAAATTGATTCTGCACTCAACACTGGCCATGAATTCATCAAGAACTCCCAGGTTAGAAACAATCCACCTGGTGATTACAAGAGTATGTTTCGCTATATGTCAAAAGGAGCATGGACCTTTTCTGATTGTGATCATGGATGGCAAGTTTCTGATTGCACTGCCGAGAACTTGAAGTGTTGTCTACTACTATCGTTACTACCGTCTGAAATGGTTGGTGAGAAGATGGAACCTGAGCGTTTCTACGATGCTGTTAATGTCATCCTGAACATGCAAAGCAAAAACGGAGGTTTACCAGCTTGGGAGCCAGCTTCAAGATACTATTGGATGGAGTGGTTGAATCCAGTGGAATTTCTCGAAGACCTAATCATCGAGCACCAGCACGTGGAGTGCACATCGTCGGCGTTACAGGGCATATTATTGTTTAGGAAACAGTACCCAGGACATAGAAGGAAAGAGATCAATAATTTTATCAACAAAGCAGTTCAATTTCTTCAAGACATACAATTGCCTGATGGTTCTTGGTATGGAAATTGGGGGATTTGCTATACTTATGGAACTTGGTTCGCACTTAAGGCATTGTCAATGGCAGGGAAGACCTATGAAAATTGTGAAGCACTTAGGAAAGGAGCCAATTTTCTATTAAAGATACAAAATCTAGAAGGAGGGTTTGGAGAGAGCTACTTGTCATGTCCTTACAAGAGATATATACCGTTGGATGGAAAAAGATCGAATATTGTGCAAACGGCATGGGGTTTGATGGGTTTGATAAGTTCTGGACAGGCAAGTGTAGACCCCGAACCCATTCATCGTGCTGCCAAGTTCCTCATCAATTCTCAAACAGAAGACGGTGATTTTCCACAAGAGGAAATTACGGGAGAATTCTTCAAAAATTGCACCTTACACTTTGCAGCATTTAGAGAATTTTGTTTTGTGAAGGGTAACAATTTTTTTATTTTTGAAAAAATTAATTTGTTTGAGTTTCACAACGCCAATCACCCATTGAAGAATTCGGAACGAACAACAACAACCGGATACCCAATTCGAATTGCGTTAGTCCAAGGTGCGCATCATCAACTCCCTCAGCATTTTGCCCAACTCCATTCATTCTGGAGATTCTTAAATGCTGTTCAACTTAAGTCGTTTCATCCCATTAGAACTGGGTTTTGTTTTGGATTCAATTCTCGTTTCAAAGTTATTGGCTTTACGACTCCAACCAATTTGGAGGCTTGGCTGTCAGAAATTTCCAAAATTCAGCGACCAGGGTCAGGGGGCGATTTGCCCCAGGGTGGCGAGTACAACCCTTATCCTGTTGCAAGGAGGGTAAATTCCTCCCATACCGTACTCATGGGCGATGACATTGAAAGTGCTAGTTTGGGGGTGTACCAAGACAGGCAAAGGACTTTCCCTGACATGCGTAGTAAAGTCAACACCCCATTGATATTTCGAATTTTGTTGGGGATAAATATTCGTGTTCTTCTAGTACTTCTTCTCTTTGCATTTGGAATAATATTCTACATTGGAGCAAGAACTTCCCCTATTATTCTGTTTGTCTTCTCGATTTGCATTGTTAGCTTCTGCTTTTCGGTATATCTAACCAAATGGGTGCTTTCGAAAGATGAAGGGCCGCAGGAGATGGCTCAGATTTCGGAGGCAATACGTGATGGGGCAGAAGGTTTCTTTAGGACACAGTATAGTACCATCTCTAAAATGGCTATGTTACTTGCAGTAGTGATTCTTTGCATATACTTGTTCCGTAGTACTACTCCTCAACAAGAATCTTCCAGAATAGGGAGGTCAACAACTGCTTATATTACTGTTGCAGCATTTCTGTTAGGAGCCTTGTGTTCAGGTATTGCAGGGTATGTTGGAATGTGGGTGTCAGTTCGTGCAAATGTCAGGGTCTCTAGTGCTGCCAGACGGTCTGCGAGGGAGGCATTGCAGATTGCTGTTCGGGCTGGTGGTTTTTCTGCCATAGTTGTTGTTGGCATGGCTGTTATTGGTATAGCCATCCTGTATGCTGCATTTCATGTTTGGTTGGATGTCGGTTCGCCAGGTTCAACCAAGGTTACTGACTTGCCTCTTCTCCTTGTGGGTTATGGTTTTGGAGCTTCTTTCGTTGCTCTATTTGCTCAGTTGGGTGGTGGTATCTATACCAAAGCTGCTGATGTTGGAGCAGACCTTGTTGGAAAAGTTGAGCAAGGAATACCAGAAGATGATCCAAGAAATCCTGCTGTTATTGCAGATCTGGTTGGGGATAATGTGGGTGATTGTGCCGCCCGAGGTGCAGATCTTTTTGAAAGCATTGCTGCTGAAATTATTAGTGCCATGATACTTGGGGGAACAATGGCTGAACGCTGTAAAATCGAAGATCCATCTGGTTTCATTTTATTTCCGCTGGTAGTACACTCCTTTGATCTGGTGATTTCATCAATTGGCATTCTCTCCATCAGGAGGGGTACTCGTGAATCTGGTGTTAAGGGTCCTATAGAGGATCCAATGACTATTCTGCAGAGAGGATACTCTGTCACTATCGTTCTAGCTGTTCTGACGTTTGGCTTGTCTACACGGTGGTTGCTTCATACTGAACAAGCACCTTCTGCATGGTTCAACTTTGCACTGTGTGGTTTGGTTGGCATTATAACGGCTTACATTTTTGTCTGGATCACCAAATACTACACTGACTACAAGCATGAGCCTGTGCGTTCATTAGCACTTTCTAGCTCTACAGGCCATGGGACAAACATTATTGCTGGAATCAGTTTGGGTCTAGAATCAACAGCACTTCCTGTTCTCGTTATTAGTGTGTCTATTGTTTCAGCTTTCTGGTTGGGACGCACATCAGGACTTGTGGACGAAGCTGGAAATCCAACAGGTGGGCTATTTGGCACTGCTGTAGCAACAATGGGAATGCTCAGCACTGCTGCCTACGTTCTCACAATGGATATGTTTGGGCCAATAGCTGATAATGCTGGTGGAATTGTTGAGATGAGTCAACAGCCAGAAAGCGTTCGGGAGATTACTGATCTTCTTGATGCAGTAGGTAACACAACTAAAGCGACCACAAAAGGTTTTGCCATTGGTTCTGCCGCACTTGCATCCTTCTTACTTTTTAGTGCTTATATGGATGAGGTATCCTCATTTGCTCATGAACCTTTTAAACAGGTAGATATTGCAATTCCAGAAGTTTTCGTTGGTGGTTTGTTGGGTTCCATGCTTATTTTTCTCTTTAGTGCTTGGGCCTGCGCTGCTGTTGGTCGAACAGCCCAGGAGGTTGTAAAGGAAGTGAGAAGACAGTTCATTGAAAGGCCTGGTATAATGGACTATACGGAGAAACCAGATTATGGACGTTGTGTTGCTATTGTAGCATCGGCATCTCTAAGGGAGATGATTAAACCTGGTGCTTTGGCTATCATTTCACCTATGGCAGTTGGCTTCCTGTTTAAAATATTGGGACACTACACTGCCCAGCCGCTTTTAGGGGCGAAGGTTGTTGCTGCTATGCTAATGTTCGCGACTGTTTCTGGTATTCTCATGGCCCTCTTTCTGAACACAGCAGGGGGTGCCTGGGATAATGCCAAAAAGTATATAGAGACTGGCGTTCTCGGAGGCAAAGGTAGCGATTGTCATAAAGCAGCCGTTACTGGTGACACCGTCGGCGACCCGTTCAAGGACACGGCAGGGCCTTCTCTTCACGTTCTTATTAAAATGCTTGCAACCATAACATTGGTCATGGCCCCGATCTTTCTCTAA 5043 43.66 MWRLKVADGGNDPYIYSMNNFVGRQIWEFDPNAGTPEEREEVECVRNEFTANRLKGLPSADLLWRLQLLRERNFKQSIPPVKIEEGEEMSYEKAWDAMRRGAHFLAAIQASDGHWPSETSGPLFYNCPLLICMYIMGFLDAAFPPEHKKEMKRYIYNHQNEDGGWGLHVGGHSNMFCTTFNYISLRLLGEGPDVEPVSRGRNWVHEHGGVTSILSWGKTWLSILNLFDWSASNPMPPEYWMFPTWVPIHPSNMMCYTRITYMPMSYLYGKRFQAPLTPLVLQLREELHTEPYDKINWKKVRHMCATEDLYFPHPFVQDLLWDTLYLLSEPLMTRWPFNKLIRQKALDDTMKHIHYEDENSRYITIGCVEKPLCMLACWVEDPNSDYVKKHFARIPDYLWMAEDGMKMQSFGSQSWDAALAMQALLACNIPQEIDSALNTGHEFIKNSQVRNNPPGDYKSMFRYMSKGAWTFSDCDHGWQVSDCTAENLKCCLLLSLLPSEMVGEKMEPERFYDAVNVILNMQSKNGGLPAWEPASRYYWMEWLNPVEFLEDLIIEHQHVECTSSALQGILLFRKQYPGHRRKEINNFINKAVQFLQDIQLPDGSWYGNWGICYTYGTWFALKALSMAGKTYENCEALRKGANFLLKIQNLEGGFGESYLSCPYKRYIPLDGKRSNIVQTAWGLMGLISSGQASVDPEPIHRAAKFLINSQTEDGDFPQEEITGEFFKNCTLHFAAFREFCFVKGNNFFIFEKINLFEFHNANHPLKNSERTTTTGYPIRIALVQGAHHQLPQHFAQLHSFWRFLNAVQLKSFHPIRTGFCFGFNSRFKVIGFTTPTNLEAWLSEISKIQRPGSGGDLPQGGEYNPYPVARRVNSSHTVLMGDDIESASLGVYQDRQRTFPDMRSKVNTPLIFRILLGINIRVLLVLLLFAFGIIFYIGARTSPIILFVFSICIVSFCFSVYLTKWVLSKDEGPQEMAQISEAIRDGAEGFFRTQYSTISKMAMLLAVVILCIYLFRSTTPQQESSRIGRSTTAYITVAAFLLGALCSGIAGYVGMWVSVRANVRVSSAARRSAREALQIAVRAGGFSAIVVVGMAVIGIAILYAAFHVWLDVGSPGSTKVTDLPLLLVGYGFGASFVALFAQLGGGIYTKAADVGADLVGKVEQGIPEDDPRNPAVIADLVGDNVGDCAARGADLFESIAAEIISAMILGGTMAERCKIEDPSGFILFPLVVHSFDLVISSIGILSIRRGTRESGVKGPIEDPMTILQRGYSVTIVLAVLTFGLSTRWLLHTEQAPSAWFNFALCGLVGIITAYIFVWITKYYTDYKHEPVRSLALSSSTGHGTNIIAGISLGLESTALPVLVISVSIVSAFWLGRTSGLVDEAGNPTGGLFGTAVATMGMLSTAAYVLTMDMFGPIADNAGGIVEMSQQPESVREITDLLDAVGNTTKATTKGFAIGSAALASFLLFSAYMDEVSSFAHEPFKQVDIAIPEVFVGGLLGSMLIFLFSAWACAAVGRTAQEVVKEVRRQFIERPGIMDYTEKPDYGRCVAIVASASLREMIKPGALAIISPMAVGFLFKILGHYTAQPLLGAKVVAAMLMFATVSGILMALFLNTAGGAWDNAKKYIETGVLGGKGSDCHKAAVTGDTVGDPFKDTAGPSLHVLIKMLATITLVMAPIFL* 1681
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 25673326 25691160 + Chy1G020960.1 Chy01g02096 219277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g02096 1680 ProSitePatterns Terpene synthases signature. 602 616 IPR002365 GO:0016866
Chy01g02096 1680 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 349 738 IPR008930 -
Chy01g02096 1680 TIGRFAM squalene_cyclas: squalene/oxidosqualene cyclases 97 739 IPR018333 GO:0005811|GO:0016104|GO:0016866
Chy01g02096 1680 PANTHER K(+)-INSENSITIVE PYROPHOSPHATE-ENERGIZED PROTON PUMP 897 1680 IPR004131 GO:0004427|GO:0009678|GO:0016020|GO:1902600
Chy01g02096 1680 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 121 407 IPR008930 -
Chy01g02096 1680 TIGRFAM V_PPase: V-type H(+)-translocating pyrophosphatase 946 1679 IPR004131 GO:0004427|GO:0009678|GO:0016020|GO:1902600
Chy01g02096 1680 CDD SQCY_1 98 741 IPR018333 GO:0005811|GO:0016104|GO:0016866
Chy01g02096 1680 Pfam Inorganic H+ pyrophosphatase 954 1675 IPR004131 GO:0004427|GO:0009678|GO:0016020|GO:1902600
Chy01g02096 1680 Pfam Squalene-hopene cyclase C-terminal domain 414 738 IPR032696 -
Chy01g02096 1680 PANTHER INORGANIC DIPHOSPHATASE-RELATED 897 1680 - -
Chy01g02096 1680 Gene3D - 119 411 - -
Chy01g02096 1680 Gene3D - 481 720 - -
Chy01g02096 1680 SFLD Prenyltransferase Like 2 92 739 IPR018333 GO:0005811|GO:0016104|GO:0016866
Chy01g02096 1680 Hamap Putative K(+)-stimulated pyrophosphate-energized sodium pump [hppA]. 942 1680 IPR004131 GO:0004427|GO:0009678|GO:0016020|GO:1902600
Chy01g02096 1680 Pfam Squalene-hopene cyclase N-terminal domain 100 358 IPR032697 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g02096 Chy-Chr1:25673326 Chy05g01155 Chy-Chr5:16004675 0 dispersed
Chy08g00432 Chy-Chr8:10434008 Chy01g02096 Chy-Chr1:25673326 9.08E-80 dispersed
Chy08g00433 Chy-Chr8:10461279 Chy01g02096 Chy-Chr1:25673326 4.09E-78 dispersed
Chy01g02095 Chy-Chr1:25654912 Chy01g02096 Chy-Chr1:25673326 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g02096 K23025 K15820 csv:101216883 1539.63