Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g02105 ATGCCGTCTGTCTATGGAGACCGTTTGACCACTTTTGAAGACTCTGAGAAGGAAAGCGAGTATGGATATGTCCGGAAGGTATCTGGACCAGTCGTCGTGGCAGATGGCATGGGAGGTGCAGCCATGTATGAATTGGTTCGTGTTGGTCATGATAATCTGATTGGTGAAATCATTAGGTTAGAAGGAGACTCTGCCACTATTCAGGTTTATGAGGAAACTGCTGGTTTGATGGTGAATGACCCTGTTTTACGTACTCGTAAACCTCTGTCAGTGGAGTTAGGACCTGGAATACTGGGAAATATATTTGATGGCATTCAGAGGCCATTAAAAACAATTGCAAAGAGATCGGGAGATGTCTACATTCCTCGTGGTGTCGCTGTGCCGGCACTGGACAAAGACACACTCTGGGATTTTCAACCCACAAAGATAGGTGAGGGCGACTTATTGACAGGTGGAGACTTGTATGCTACTGTCTTTGAGAATAGTCTAATGGAGCACCGCATTGCACTTCCTCCTGAAGCTATGGGAAAAGTTACCTATATTGCAGCACCCGGTCAATATTCATTGAAGGATACTGTTCTAGAGCTCGAGTTTCAAGGAGTTAGAAAGCAATTTACCATGCTTCAGACTTGGCCTGTTCGTACTCCTAGACCAGTTGCATCGAAGCTTGCAGCTGATACCCCTCTTTTGACTGGACAGCGTGTTCTTGATGCACTCTTCCCTTCTGTTCTTGGTGGAACATGTGCCATTCCTGGAGCGTTTGGTTGTGGAAAAACAGTCATTAGTCAAGCTCTCTCTAAATATTCCAATTCTGATACTGTGGTATATGTTGGTTGTGGAGAGAGAGGAAATGAAATGGCTGAAGTTCTTATGGATTTTCCTCAATTGACAATGACATTGCCTGATGGTCGTGAAGAATCTGTCATGAAGCGTACCACTCTTGTAGCTAACACTTCTAATATGCCTGTGGCTGCTCGTGAAGCTTCGATTTATACGGGAATTACTTTGGCCGAGTACTTCAGAGATATGGGATACAATGTAAGTATGATGGCAGATTCAACATCTCGATGGGCAGAAGCACTACGTGAAATATCTGGACGATTGGCAGAAATGCCAGCAGATAGTGGATATCCTGCTTACCTAGCAGCACGTTTAGCCTCTTTCTATGAGCGTGCTGGTAAAGTGAAATGTCTCGGTGGGCCAGAACGAACTGGCAGTGTTACCATTGTCGGTGCAGTTTCTCCACCTGGAGGAGATTTCTCTGATCCGGTTACATCTGCTACTCTCAGTATTGTCCAGGTCTTCTGGGGTCTAGATAAGAAGCTTGCCCAGAGGAAGCACTTCCCTTCTGTGAACTGGCTAATTTCATACTCAAAATACTCCTCTGCGTTGGAGTCTTTCTACGAGAAGTTTGATCCAGATTTTATTAGCATCAGGACGAAGGCTCGTGAAGTCCTTCAGAGGGAAGATGACCTCAATGAAATTGTCCAACTTGTAGGGAAAGACGCCTTAGCCGAAGGAGATAAGATCACCTTAGAGACTGCAAAGCTTTTGAGGGAGGACTATCTTGCTCAGAATGCATTTACTCCGTACGATAAATTCTGCCCATTCTACAAGTCGGTCTGGATGATGCGTAATATCATTCATTTCTACAATTTGGCTAATCAGGCAGTAGAGAGGGGTGCGGGTATGGATGGCCAAAAGATAACATACACTTTGATTAAGCATCGGTTGGGAGATCTTTTCTATCGCCTCGTGTCTCAGAAGTTCGAGGATCCAGCTGAGGGAGAACCAGCTCTCCTCGAAAAATTCAAGAAGCTACATGAAGATCTGACAAACGGTTTCCGTGCTCTCGAGGACGAAACTCGATAG 1872 45.19 MPSVYGDRLTTFEDSEKESEYGYVRKVSGPVVVADGMGGAAMYELVRVGHDNLIGEIIRLEGDSATIQVYEETAGLMVNDPVLRTRKPLSVELGPGILGNIFDGIQRPLKTIAKRSGDVYIPRGVAVPALDKDTLWDFQPTKIGEGDLLTGGDLYATVFENSLMEHRIALPPEAMGKVTYIAAPGQYSLKDTVLELEFQGVRKQFTMLQTWPVRTPRPVASKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITLAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSSALESFYEKFDPDFISIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVERGAGMDGQKITYTLIKHRLGDLFYRLVSQKFEDPAEGEPALLEKFKKLHEDLTNGFRALEDETR* 624
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
1 25763129 25768344 + Chy1G021050.1 Chy01g02105 219286

Annotation


Select Seq ID Length Analysis Description Start End IPR GO
Chy01g02105 623 Hamap V-type ATP synthase alpha chain [atpA]. 19 622 IPR022878 GO:0046034|GO:0046961
Chy01g02105 623 SUPERFAMILY N-terminal domain of alpha and beta subunits of F1 ATP synthase 17 89 IPR036121 GO:0046034|GO:1902600
Chy01g02105 623 PANTHER V-TYPE PROTON ATPASE CATALYTIC SUBUNIT A 3 622 - -
Chy01g02105 623 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 232 458 IPR000194 GO:0005524
Chy01g02105 623 Coils Coil 601 621 - -
Chy01g02105 623 PANTHER V-TYPE PROTON ATPASE CATALYTIC SUBUNIT A 3 622 IPR022878 GO:0046034|GO:0046961
Chy01g02105 623 Gene3D - 459 613 IPR024034 -
Chy01g02105 623 SUPERFAMILY C-terminal domain of alpha and beta subunits of F1 ATP synthase 471 553 - -
Chy01g02105 623 ProSitePatterns ATP synthase alpha and beta subunits signature. 449 458 IPR020003 GO:0005524
Chy01g02105 623 CDD ATP-synt_V_A-type_alpha_C 475 581 - -
Chy01g02105 623 Gene3D - 134 205 - -
Chy01g02105 623 TIGRFAM V-ATPase_V1_A: V-type ATPase, A subunit 20 611 IPR005725 GO:0033180|GO:0046961|GO:1902600
Chy01g02105 623 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 203 463 IPR027417 -
Chy01g02105 623 CDD ATP-synt_V_A-type_alpha_N 21 87 - -
Chy01g02105 623 Gene3D - 20 89 IPR023366 -
Chy01g02105 623 CDD V_A-ATPase_A 88 460 - -
Chy01g02105 623 Pfam ATPsynthase alpha/beta subunit N-term extension 102 223 IPR031686 -
Chy01g02105 623 Gene3D - 91 457 IPR027417 -
Chy01g02105 623 Pfam ATP synthase alpha/beta family, beta-barrel domain 25 85 IPR004100 GO:0046034|GO:1902600
       

Pathway


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g02105 K02145 ATPeV1A, ATP6A; V-type H+-transporting ATPase subunit A [EC:7.1.2.2] - csv:101216234 1240.33
       

Dupl-types


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g02105 Chy-Chr1:25763129 Chy09g00876 Chy-Chr9:11509138 1.20E-26 dispersed
Chy01g02105 Chy-Chr1:25763129 Chy10g01193 Chy-Chr10:16688849 1.23E-26 transposed
       

Syn-Families


Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy03g01604 . 376 1373 Primary Pumps ATPases(2) AT1G10130 82.8 0.0e+00 1621.7
Chy11g01306 . 1 814 Primary Pumps ATPases(2) AT2G28520 81.3 0.0e+00 1340.1
Chy03g01413 . 1 803 Primary Pumps ATPases(2) AT2G28520 63.2 8.0e-296 1013.1
Chy01g00757 . 10 813 Primary Pumps ATPases(2) AT2G28520 63.3 3.4e-294 1007.7
Chy01g00757 . 6 819 Primary Pumps ATPases(2) AT2G21410 75.6 0.0e+00 1226.1
Chy03g01413 . 1 809 Primary Pumps ATPases(2) AT2G21410 73.4 0.0e+00 1197.6
Chy11g01306 . 9 820 Primary Pumps ATPases(2) AT2G21410 62.2 3.0e-298 1021.1
Chy01g00757 . 8 819 Primary Pumps ATPases(2) AT4G39080 76.9 0.0e+00 1231.5
Chy03g01413 . 1 809 Primary Pumps ATPases(2) AT4G39080 74.3 0.0e+00 1192.9
Chy11g01306 . 9 818 Primary Pumps ATPases(2) AT4G39080 63.5 5.6e-297 1016.9
Chy06g00369 . 28 129 Primary Pumps ATPases(2) AT4G34720 93.1 1.1e-38 156.4
Chy03g01403 . 36 130 Primary Pumps ATPases(2) AT4G34720 98.9 1.9e-38 155.6
Chy03g01404 . 28 121 Primary Pumps ATPases(2) AT4G34720 100.0 9.2e-38 153.3
Chy06g00369 . 2 123 Primary Pumps ATPases(2) AT1G75630 95.9 1.3e-50 196.4
Chy03g01404 . 2 124 Primary Pumps ATPases(2) AT1G75630 95.1 5.1e-50 194.5
Chy03g01403 . 2 130 Primary Pumps ATPases(2) AT1G75630 90.7 4.7e-48 188.0
Chy06g00369 . 3 129 Primary Pumps ATPases(2) AT2G16510 93.7 1.3e-51 199.5
Chy03g01404 . 3 121 Primary Pumps ATPases(2) AT2G16510 99.2 8.4e-51 196.8
Chy03g01403 . 3 130 Primary Pumps ATPases(2) AT2G16510 92.2 3.5e-49 191.4
Chy06g00369 . 1 122 Primary Pumps ATPases(2) AT1G19910 98.4 1.1e-52 202.6
Chy03g01404 . 1 121 Primary Pumps ATPases(2) AT1G19910 97.5 1.6e-51 198.7
Chy03g01403 . 1 130 Primary Pumps ATPases(2) AT1G19910 92.3 1.8e-50 195.3
Chy04g00346 . 1 175 Primary Pumps ATPases(2) AT2G25610 84.0 2.6e-71 265.4
Chy03g01156 . 4 180 Primary Pumps ATPases(2) AT2G25610 84.2 2.9e-70 261.9
Chy06g00369 . 28 129 Primary Pumps ATPases(2) AT4G38920 93.1 3.1e-38 154.8
Chy03g01403 . 36 130 Primary Pumps ATPases(2) AT4G38920 98.9 5.2e-38 154.1
Chy03g01404 . 28 121 Primary Pumps ATPases(2) AT4G38920 100.0 2.6e-37 151.8
Chy04g00346 . 6 175 Primary Pumps ATPases(2) AT4G32530 77.5 2.0e-73 272.3
Chy03g01156 . 1 180 Primary Pumps ATPases(2) AT4G32530 73.3 2.4e-71 265.4
Chy12g00153 . 1 1066 Primary Pumps ATPases(2) AT1G07810 80.4 0.0e+00 1667.5
Chy12g00153 . 1 1066 Primary Pumps ATPases(2) AT1G07670 80.3 0.0e+00 1669.1
Chy03g01604 . 376 1373 Primary Pumps ATPases(2) AT1G10130 82.8 0.0e+00 1621.7
Chy12g00153 . 22 1046 Primary Pumps ATPases(2) AT4G00900 65.4 0.0e+00 1313.9
Chy02g01423 . 1 126 Primary Pumps ATPases(2) AT4G02620 84.9 1.2e-57 219.2
Chy01g00662 . 6 489 Primary Pumps ATPases(2) AT1G76030 96.3 1.5e-268 921.8
Chy05g00536 . 553 814 Primary Pumps ATPases(2) AT3G58730 82.1 1.6e-117 419.1
Chy04g01674 . 14 466 Primary Pumps ATPases(2) AT3G42050 79.5 5.8e-208 720.3
Chy06g00369 . 3 129 Primary Pumps ATPases(2) AT2G16510 93.7 1.3e-51 199.5
Chy03g01404 . 3 121 Primary Pumps ATPases(2) AT2G16510 99.2 8.4e-51 196.8
Chy03g01403 . 3 130 Primary Pumps ATPases(2) AT2G16510 92.2 3.5e-49 191.4
Chy01g00662 . 1 489 Primary Pumps ATPases(2) AT4G38510 95.5 2.3e-269 924.5
Chy06g01559 . 177 360 Primary Pumps ATPases(2) AT1G64200 73.3 1.8e-65 245.7
Chy01g00662 . 9 489 Primary Pumps ATPases(2) AT1G20260 96.1 3.0e-266 914.1
Chy11g01306 . 1 814 Primary Pumps ATPases(2) AT2G28520 81.3 0.0e+00 1340.1
Chy03g01413 . 1 803 Primary Pumps ATPases(2) AT2G28520 63.2 8.0e-296 1013.1
Chy01g00757 . 10 813 Primary Pumps ATPases(2) AT2G28520 63.3 3.4e-294 1007.7
Chy04g01523 . 1 351 Primary Pumps ATPases(2) AT3G28715 91.7 8.6e-191 662.9
Chy06g01559 . 177 406 Primary Pumps ATPases(2) AT4G11150 76.6 1.3e-89 326.2
Chy01g02105 . 1 624 Primary Pumps ATPases(2) AT1G78900 92.8 0.0e+00 1167.1
Chy01g00662 . 6 489 Primary Pumps ATPases(2) AT1G76030 96.3 1.5e-268 921.8
Chy01g00662 . 1 489 Primary Pumps ATPases(2) AT4G38510 95.5 2.3e-269 924.5
Chy01g00662 . 9 489 Primary Pumps ATPases(2) AT1G20260 96.1 3.0e-266 914.1
Chy05g00536 . 553 814 Primary Pumps ATPases(2) AT3G58730 82.1 1.6e-117 419.1
Chy06g01559 . 177 406 Primary Pumps ATPases(2) AT4G11150 76.6 1.3e-89 326.2
Chy06g01559 . 177 399 Primary Pumps ATPases(2) AT3G08560 68.1 7.7e-74 273.9
Chy06g01559 . 177 360 Primary Pumps ATPases(2) AT1G64200 73.3 1.8e-65 245.7
Chy02g01423 . 1 126 Primary Pumps ATPases(2) AT4G02620 84.9 1.2e-57 219.2
Chy04g01674 . 14 466 Primary Pumps ATPases(2) AT3G42050 79.5 5.8e-208 720.3
Chy11g01306 . 1 814 Primary Pumps ATPases(2) AT2G28520 81.3 0.0e+00 1340.1
Chy03g01413 . 1 803 Primary Pumps ATPases(2) AT2G28520 63.2 8.0e-296 1013.1
Chy01g00757 . 10 813 Primary Pumps ATPases(2) AT2G28520 63.3 3.4e-294 1007.7
Chy01g00757 . 6 819 Primary Pumps ATPases(2) AT2G21410 75.6 0.0e+00 1226.1
Chy03g01413 . 1 809 Primary Pumps ATPases(2) AT2G21410 73.4 0.0e+00 1197.6
Chy11g01306 . 9 820 Primary Pumps ATPases(2) AT2G21410 62.2 3.0e-298 1021.1
Chy01g00757 . 8 819 Primary Pumps ATPases(2) AT4G39080 76.9 0.0e+00 1231.5
Chy03g01413 . 1 809 Primary Pumps ATPases(2) AT4G39080 74.3 0.0e+00 1192.9
Chy11g01306 . 9 818 Primary Pumps ATPases(2) AT4G39080 63.5 5.6e-297 1016.9
Chy06g00369 . 28 129 Primary Pumps ATPases(2) AT4G34720 93.1 1.1e-38 156.4
Chy03g01403 . 36 130 Primary Pumps ATPases(2) AT4G34720 98.9 1.9e-38 155.6
Chy03g01404 . 28 121 Primary Pumps ATPases(2) AT4G34720 100.0 9.2e-38 153.3
Chy06g00369 . 1 122 Primary Pumps ATPases(2) AT1G19910 98.4 1.1e-52 202.6
Chy03g01404 . 1 121 Primary Pumps ATPases(2) AT1G19910 97.5 1.6e-51 198.7
Chy03g01403 . 1 130 Primary Pumps ATPases(2) AT1G19910 92.3 1.8e-50 195.3
Chy06g00369 . 28 129 Primary Pumps ATPases(2) AT4G38920 93.1 3.1e-38 154.8
Chy03g01403 . 36 130 Primary Pumps ATPases(2) AT4G38920 98.9 5.2e-38 154.1
Chy03g01404 . 28 121 Primary Pumps ATPases(2) AT4G38920 100.0 2.6e-37 151.8
Chy06g00369 . 2 123 Primary Pumps ATPases(2) AT1G75630 95.9 1.3e-50 196.4
Chy03g01404 . 2 124 Primary Pumps ATPases(2) AT1G75630 95.1 5.1e-50 194.5
Chy03g01403 . 2 130 Primary Pumps ATPases(2) AT1G75630 90.7 4.7e-48 188.0
Chy06g00369 . 3 129 Primary Pumps ATPases(2) AT2G16510 93.7 1.3e-51 199.5
Chy03g01404 . 3 121 Primary Pumps ATPases(2) AT2G16510 99.2 8.4e-51 196.8
Chy03g01403 . 3 130 Primary Pumps ATPases(2) AT2G16510 92.2 3.5e-49 191.4
Chy04g00346 . 6 175 Primary Pumps ATPases(2) AT4G32530 77.5 2.0e-73 272.3
Chy03g01156 . 1 180 Primary Pumps ATPases(2) AT4G32530 73.3 2.4e-71 265.4
Chy04g00346 . 1 175 Primary Pumps ATPases(2) AT2G25610 84.0 2.6e-71 265.4
Chy03g01156 . 4 180 Primary Pumps ATPases(2) AT2G25610 84.2 2.9e-70 261.9
Chy04g01523 . 1 351 Primary Pumps ATPases(2) AT3G28710 94.0 7.4e-198 686.4
Chy04g01523 . 1 351 Primary Pumps ATPases(2) AT3G28715 91.7 8.6e-191 662.9
Chy12g00153 . 1 1066 Primary Pumps ATPases(2) AT1G07810 80.4 0.0e+00 1667.5
Chy12g00153 . 22 1046 Primary Pumps ATPases(2) AT4G00900 65.4 0.0e+00 1313.9
Chy03g01604 . 376 1373 Primary Pumps ATPases(2) AT1G10130 82.8 0.0e+00 1621.7
Chy12g00153 . 1 1066 Primary Pumps ATPases(2) AT1G07670 80.3 0.0e+00 1669.1
       

Syn-Orthogroups


Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006487 2 1 2 1 2 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 0 1 1 1 1 1 1 1 2 37