Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g02108 ATGGACAGTATTCATCCAAGTGATGGACGGATGCATATCAGCCATGCACAGCATTCGATGCACACGCAATCTGTGCAAGAACAGGAACACCATGACTTGCATTATATGAGTAATGGGAATGGATTGGCTGATGAACATGAAAATGAAGGTCATGGTATTATGGTTGTGGAAAGGGAAGTTCAATCGGACCATGGTGATCTTGCTGAGAATCGTGGTGTAATGGTGGATCGAGGAGGCGAGAACTGCGACCAGCTCACCCTGTCTTATCAGGGTCAAGTTTATGTTTTCGATTCTGTCTCGCCCGAAAAGGTACAAGCCGTGTTATTATTATTGGGAGGTCGTGAAGTACCTTTACGTGTTCCGTCGATCCCAATAACTAATCAGCCAAATGATAGGCATCTCACTGATGAAGCGTTTAACCAGGCACTTGCCAATATTCCCCCACGTCTAAGTGTCCCTCAGAGATTAGCTTCTTTGATTAGATTTCGTGAAAAGCGAAAGGAACGTAATTTTGACAAGAAAATTCGGTATACAGTTCGTAAAGAGGTAGCACTTAGGATGCAGCGTAATAAAGGCCAGTTCACATCTTCTAAACCCATTCATGAAGATTCATCATTGGCCATGGCGAGTTGGGAACAAAATGAGAGCTGGAGTAGTGATGGAAATGGATCCCAACAACAAGAAATTCTCTGTCGACATTGTGGTATTAGTGAGAAGTCAACACCAATGATGCGACGTGGACCTGATGGGCCAAGAACCCTTTGCAATGCTTGCGGACTCATGTGGGCAAACAAGATGGATCTTTCTTGGTTTCTAACATCTGTTGCAAGCATGGGCAATAGTCCACTGCTTATTTCAGTCTTCACCTCAATGACGTCCCTAGATCCTCTTCTTTTTGGGCTCCTATCACCTTGA 915 44.37 MDSIHPSDGRMHISHAQHSMHTQSVQEQEHHDLHYMSNGNGLADEHENEGHGIMVVEREVQSDHGDLAENRGVMVDRGGENCDQLTLSYQGQVYVFDSVSPEKVQAVLLLLGGREVPLRVPSIPITNQPNDRHLTDEAFNQALANIPPRLSVPQRLASLIRFREKRKERNFDKKIRYTVRKEVALRMQRNKGQFTSSKPIHEDSSLAMASWEQNESWSSDGNGSQQQEILCRHCGISEKSTPMMRRGPDGPRTLCNACGLMWANKMDLSWFLTSVASMGNSPLLISVFTSMTSLDPLLFGLLSP* 305
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 25787143 25789770 - Chy1G021080.1 Chy01g02108 219289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g02108 304 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 226 265 - -
Chy01g02108 304 ProSiteProfiles CCT domain profile. 155 197 IPR010402 GO:0005515
Chy01g02108 304 ProSiteProfiles Tify domain profile. 78 113 IPR010399 -
Chy01g02108 304 SMART tify_2 78 113 IPR010399 -
Chy01g02108 304 Pfam GATA zinc finger 231 265 IPR000679 GO:0006355|GO:0043565
Chy01g02108 304 Pfam CCT motif 155 197 IPR010402 GO:0005515
Chy01g02108 304 PANTHER GATA TRANSCRIPTION FACTOR 28 4 269 - -
Chy01g02108 304 ProSitePatterns GATA-type zinc finger domain. 231 258 IPR000679 GO:0006355|GO:0043565
Chy01g02108 304 CDD ZnF_GATA 231 265 IPR000679 GO:0006355|GO:0043565
Chy01g02108 304 SMART GATA_3 225 282 IPR000679 GO:0006355|GO:0043565
Chy01g02108 304 Gene3D - 216 268 IPR013088 GO:0006355|GO:0008270
Chy01g02108 304 Pfam tify domain 84 112 IPR010399 -
Chy01g02108 304 PANTHER GATA TRANSCRIPTION FACTOR 28 4 269 IPR045280 GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g02108 Chy-Chr1:25787143 Chy03g01317 Chy-Chr3:16151628 4.66E-58 dispersed
Chy01g02108 Chy-Chr1:25787143 Chy05g00292 Chy-Chr5:2853735 5.29E-06 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17383 PF06203 CCT 8.80E-15 CL0281 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g02108 - - csv:101215755 545.814