Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g02121 ATGGATTGGATGTGGCGGGAGCTGATATCTTTCATCATTCTTTGCATTCTATGGTCGAAGCCTATCTGCATTCAAGGCACCACACATCCAACAGATGCCTCTGCTTTAAGGGTTTTGTACATCAGTTTAGACTCCCCCTCTCAGTTAACCCAGTGGAACGCAAATGGGGGTGACCCTTGTGGACAATCATGGAAGGGGATTACTTGCTCCGGCTCACGGGTTACAGAAATAAACTTATCTGGCCTTGGACTCAGTGGATCGCTTGGATACCAGCTTGGAAGTATGACATCGGTAACCAACCTGGATGTGAGTAATAACAATCTTGGAGGCGAGATTGTCTACAACCTTCCACCTAACCTGAAAAGACTAAATCTTGGACGAAACAACTTCAATAAAGGCATCCCTTATTCTATTTCTATGATGACTTCTCTTCAATACTTAAACATCAGTCGTAATCAGCTTCAGGATCCATTGAATGATGTGTATGGCCAGCTAACTTCCCTATCCATATTGGATCTGTCTTTCAATGCTATGTCAGGCAACCTGCCTCAGAGTTTTAGCTCACTTTCTGGCATCAGCTCTATGTATTTGCAAAACAATCAGTTCACTGGCACAATTGATGTCCTTGCAACTCTTCCTCTTGATAACCTGAATGTTGAAAATAACCGTTTCACTGGTTGGATCCCTGAACCACTGAAAAACATCAACTTGCAGAAAAATGGAAACTCCTGGAACACCGGTCCTGCACCCCCTCCTCCGCCTGGTACACCCCCAGCCACCAGAAGAAACCGAAGTCACAATCCAGGTGGCAGTCCATCCAATGGTGGTTCTAGTGAAGGTCAGAAATCAGGTATTGGTGGTGGTGCCATTGCAGGAATTATCATTTCTGTGTTTGTTGTTGGAGCTGTAGTAGCATTCTTCCTCGTCAGGAGGAGATCCAAGAGACCGTTGACGGATATTGAAAAGCTCGACAATCAACCCCTGCAACCTCTTAAAATGACTGCGGCACAAGAAACAAAGTCGGAAGATTCTTCCTCCACATTTTATCCAACATCATTTGAATCTTCTGCTGCAATTAACCTTAAACCCCCACCTATTGATCGTCACAAATCGTTTGACGAAGATGACTTTGCCAAACGAGCCCCAGTCAAGAAGGCTAGTGCTGCCGCTCCTATTAATGTAAAGTCATATTCAATAGCAGACCTTCAAATGGCGACAGGCAGCTTCAATGTTGATAATCTTCTTGGTGAGGGATCATTCGGACGTGTATATCGAGCTGAATTTGATGACGGGAAGGTTCTTGCCGTGAAAAAAATAAATTCATCTGCACTACCTCGGGAATTATCCGAAGATTTCACTGATATTGTTTCTAAAGTCTCCCAGTTACACCATCCCAATGTAACTGAACTCGTCGGTTATTGCTCAGAGCATGGGCAGCATTTGCTTGTGTACGAGTTCCATAGAAATGGCTCGCTTTACGACGTCTTACATCTATCGCTATCAGATGAATACAACAAACCTCTGATATGGAATTTACGCGTTAAGATCGCTCTGGGAACAGCGCGCGCATTAGAGTATCTTCATGAAGTGTGCTCCCCATCAATTGTTCATAGAAACATCAAGTCTGCTAACATATTGCTGGATGCCGAACTCAGCCCCCATCTTTCTGATTCTGGACTGGAAAGCTTTATACCAAATGCAGATCAGGCAATGGATGGGAGTGGAAGTTCAGGATACACTGCGCCGGAGGTTACCATGTCGGGCCAATATACTCTGAAAAGTGATGTGTATAGTTTTGGAGTAGTCATGTTGGAACTGTTGACTGGGCGAAAACCATTTGATAGTTCAAGGCCAAGGTCGGAGCAATCTTTGGTTCGATGGGCAACGCCTCAGCTTCATGACATTGATGCTTTAACCAAGATGGTTGATCCCGAACTCAAAGGCCTTTATCCTGTTAAATCTATCTCCCGATTTGCAGATGTGATTGCACTTTGCGTTCAGACGGAACCTGAGTTTAGACCTCCAATGTCGGAGGTGGTCGAGGCGTTGGTCCGCTTGGTGCAACGAGCAAACATGAGTAAGAGAACATATGGAAACGACAATGCAACATCTCCCAGAGGGGAGATGGGTGGAGAGGACACACCATAA 2148 44.97 MDWMWRELISFIILCILWSKPICIQGTTHPTDASALRVLYISLDSPSQLTQWNANGGDPCGQSWKGITCSGSRVTEINLSGLGLSGSLGYQLGSMTSVTNLDVSNNNLGGEIVYNLPPNLKRLNLGRNNFNKGIPYSISMMTSLQYLNISRNQLQDPLNDVYGQLTSLSILDLSFNAMSGNLPQSFSSLSGISSMYLQNNQFTGTIDVLATLPLDNLNVENNRFTGWIPEPLKNINLQKNGNSWNTGPAPPPPPGTPPATRRNRSHNPGGSPSNGGSSEGQKSGIGGGAIAGIIISVFVVGAVVAFFLVRRRSKRPLTDIEKLDNQPLQPLKMTAAQETKSEDSSSTFYPTSFESSAAINLKPPPIDRHKSFDEDDFAKRAPVKKASAAAPINVKSYSIADLQMATGSFNVDNLLGEGSFGRVYRAEFDDGKVLAVKKINSSALPRELSEDFTDIVSKVSQLHHPNVTELVGYCSEHGQHLLVYEFHRNGSLYDVLHLSLSDEYNKPLIWNLRVKIALGTARALEYLHEVCSPSIVHRNIKSANILLDAELSPHLSDSGLESFIPNADQAMDGSGSSGYTAPEVTMSGQYTLKSDVYSFGVVMLELLTGRKPFDSSRPRSEQSLVRWATPQLHDIDALTKMVDPELKGLYPVKSISRFADVIALCVQTEPEFRPPMSEVVEALVRLVQRANMSKRTYGNDNATSPRGEMGGEDTP* 716
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 25887747 25904354 + Chy1G021210.1 Chy01g02121 219302

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g02121 715 SUPERFAMILY L domain-like 44 234 - -
Chy01g02121 715 MobiDBLite consensus disorder prediction 260 281 - -
Chy01g02121 715 ProSitePatterns Protein kinases ATP-binding region signature. 415 438 IPR017441 GO:0005524
Chy01g02121 715 Pfam Leucine Rich repeat 142 156 IPR001611 GO:0005515
Chy01g02121 715 Pfam Leucine Rich repeat 96 114 IPR001611 GO:0005515
Chy01g02121 715 Gene3D Transferase(Phosphotransferase) domain 1 488 705 - -
Chy01g02121 715 ProSiteProfiles Protein kinase domain profile. 409 686 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy01g02121 715 PANTHER OS01G0253100 PROTEIN 19 708 IPR045271 GO:0004714|GO:0006468
Chy01g02121 715 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 6 19 708 - -
Chy01g02121 715 Gene3D Ribonuclease Inhibitor 28 252 IPR032675 -
Chy01g02121 715 SUPERFAMILY Protein kinase-like (PK-like) 392 683 IPR011009 -
Chy01g02121 715 MobiDBLite consensus disorder prediction 695 715 - -
Chy01g02121 715 MobiDBLite consensus disorder prediction 238 283 - -
Chy01g02121 715 Pfam Protein tyrosine and serine/threonine kinase 411 683 IPR001245 GO:0004672|GO:0006468
Chy01g02121 715 Gene3D Phosphorylase Kinase; domain 1 374 486 - -
Chy01g02121 715 CDD STKc_IRAK 415 686 - -
Chy01g02121 715 Pfam Leucine rich repeat N-terminal domain 30 70 IPR013210 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g02121 - - - csv:101213107 1318.91
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g02121 Chy-Chr1:25887747 Chy03g00317 Chy-Chr3:3599734 0 dispersed
Chy01g02121 Chy-Chr1:25887747 Chy04g00715 Chy-Chr4:8714168 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi9g7 Blo05g00016 . . . . . . Bma13g01189 Cmo08g00808 Cmo17g00626 Cma01g00022 . Car01g00018 Car14g01082 . Cpe12g00545 Cpe17g00420 Bhi01g02818 . . . . . . . . . . . . . . Cone17ag0031 . . Lsi02g02850 Csa07g02300 . Cme01g02755 . Blo10g00947 . . . Bpe09g00053 Bma09g01001 . . Cmo01g00024 . Cma08g00837 Cma17g00644 Car08g00721 Car17g00608 Cpe02g01752 . Bhi09g00253 . . . . . . Cla09g00135 . . . . . . . Csa03g02807 Chy01g02121 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy01g00369 . 31 788 Strubbelig Receptor Gene Family AT4G03390 62.9 2.2e-210 729.2
Chy02g00324 . 17 752 Strubbelig Receptor Gene Family AT4G03390 53.2 8.2e-157 551.2
Chy04g01764 . 9 741 Strubbelig Receptor Gene Family AT5G06820 53.1 1.2e-181 633.6
Chy03g00317 . 22 697 Strubbelig Receptor Gene Family AT1G78980 61.5 1.4e-195 679.9
Chy04g00715 . 23 719 Strubbelig Receptor Gene Family AT1G78980 50.6 2.6e-154 542.7
Chy01g02121 . 24 692 Strubbelig Receptor Gene Family AT1G78980 50.5 9.8e-125 444.5
Chy03g00317 . 20 674 Strubbelig Receptor Gene Family AT3G13065 52.2 4.1e-144 508.8
Chy12g00528 . 388 681 Strubbelig Receptor Gene Family AT1G11130 53.4 1.3e-84 311.2
Chy04g01764 . 9 741 Strubbelig Receptor Gene Family AT5G06820 53.1 1.2e-181 633.6
Chy01g00369 . 31 788 Strubbelig Receptor Gene Family AT4G03390 62.9 2.2e-210 729.2
Chy02g00324 . 17 752 Strubbelig Receptor Gene Family AT4G03390 53.2 8.2e-157 551.2
Chy03g00317 . 20 674 Strubbelig Receptor Gene Family AT3G13065 52.2 4.1e-144 508.8
Chy03g00317 . 22 697 Strubbelig Receptor Gene Family AT1G78980 61.5 1.4e-195 679.9
Chy04g00715 . 23 719 Strubbelig Receptor Gene Family AT1G78980 50.6 2.6e-154 542.7
Chy01g02121 . 24 692 Strubbelig Receptor Gene Family AT1G78980 50.5 9.8e-125 444.5
Chy04g00715 . 1 719 Strubbelig Receptor Gene Family AT1G53730 59.8 8.0e-215 743.8
Chy01g02121 . 8 714 Strubbelig Receptor Gene Family AT1G53730 60.1 3.3e-184 642.1
Chy12g00528 . 5 689 Strubbelig Receptor Gene Family AT1G53730 51.6 1.4e-158 557.0
Chy03g00317 . 15 682 Strubbelig Receptor Gene Family AT1G53730 51.8 1.2e-157 553.9
Chy04g00715 . 11 714 Strubbelig Receptor Gene Family AT3G14350 53.4 7.2e-189 657.5
Chy01g02121 . 6 704 Strubbelig Receptor Gene Family AT3G14350 55.1 4.9e-169 591.7
Chy12g00528 . 138 712 Strubbelig Receptor Gene Family AT4G22130 60.3 1.1e-179 626.7
Chy04g00715 . 398 726 Strubbelig Receptor Gene Family AT4G22130 63.4 5.3e-121 431.8
Chy01g02121 . 391 706 Strubbelig Receptor Gene Family AT4G22130 64.2 5.1e-116 415.2
Chy01g00369 . 456 780 Strubbelig Receptor Gene Family AT4G22130 57.7 4.3e-107 385.6
Chy03g00317 . 386 696 Strubbelig Receptor Gene Family AT4G22130 56.9 2.2e-98 356.7
Chy02g00324 . 464 752 Strubbelig Receptor Gene Family AT4G22130 60.1 2.8e-98 356.3
Chy04g01764 . 393 715 Strubbelig Receptor Gene Family AT4G22130 50.5 2.9e-87 319.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001486 0 7 2 3 1 2 4 1 2 2 2 2 4 2 2 4 2 3 4 2 2 2 2 1 1 2 2 1 1 1 66
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
71010 PF07714 PK_Tyr_Ser-Thr 3.30E-42 CL0016 Chy PK