Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g02125 ATGAAAGAGACCGACGCCATGGAACAACCCATCGCCGCCGGCGCCGGAGTCTCAAACTCCAGCGACCTCCAAAAAACCCAAAAAAGTTCAAAGAAAAAGCTTATAATCTTAACCCTTTCTTCCATTCTCCTCGTCGTCGGTGCCGCCATTGGCATCGTTGCCGGAACAACAAAATCGCCGTCGAAAGACTCCGGCAAGTCCCACGCCATTGTGAAGAGCACGTGCAGCAGCACGCTGTATCCGGACACGTGCTATTCTGCAATTTCGAGAAGTGAAGGAGCAATGTTGAAAGTGAAGAATCAAAAGGATGTGATTGAAATTTCGATTAATATTACGGTGAAAGCTGTGGAGGAAAATTACTTTAGAGTGAAGAAACTCTATGGGTTGAAGAATATTAGTCAACGGGAGAAAATTGCTCTTCATGATTGTCTTGAGACGATTGATGAAACGCTTGATGAACTTCATAAAGCTACTGTGGATCTTAATGAATACCCAAATAAAAAGTCTCTTAACCAACATGCTGATGATCTCAAGACCTTGCTTAGTTCCGCTATTACTAATCAGGAAACGTGTATCGATGGATTCTCCCACGACCATGCGGACAAAAAACTACGCAAAAAGTTGAAAAAGGGGCAAATGGAAGTGGAACACATGTGCAGTAATGCATTAGCCATGATAAAGAACATGACGGACACAGACATAGCCAACTACGAGGCTAAAATGGGAATAACAAAAAATAGAAAACTCATGGCGGAGGAAGACAACAGCAATAACGACGAAATCCAGTGGCCGGAGTGGCTGTCTGCCGGGGACCGACGACTGCTGCAGTCGTCGTCTGTGACGCCGAATGTGGTGGTGGCGGCGGACGGTAGTGGAGACTTTCGAACGGTGGCAGCAGCCGTGGCGGCGGCGCCGCAGAAAAGTAGTAAGAGATATGTCATAAGAATTAAAGCTGGGGTTTATAGAGAGAATGTGGAAGTGCCGAAGAAGAAGACGAATATTATGTTTATCGGAGATGGAAGACGGAACACCATAATTACCGGTAGCCGGAATGTGGTCGACGGCAGCACCACTTTCAACTCGGCAACCGTGGCTGCGGTTGGTGAAGGATTTCTAGCGCGTGATATCACCTTCCAAAACACCGCCGGTCCATCGAAGCACCAAGCGGTGGCTCTCCGCGTCGGAGCAGATCTCTCAGCCTTCTACCAATGCGATATGTTAGCTTACCAAGACACTCTCTACGTCCATTCCAACCGTCAATTCTACATCAACTGTCTCGTCTCCGGCACAGTCGATTTCATCTTCGGCAACGCCGCTGCCATTTTCCAAGACTGTGACATTCACGCACGCAAACCAAATTCCGGTCAGAAAAACATGGTCACGGCTCAAGGCCGGTCCGACCCGAACCAAAACACCGGTATTGTTATCCAAAAATCACGAATCGGAGCTACGTCGGATCTCCGCCCGGTTCAGAAGAGTTTCCCGACTTTTCTGGGAAGGCCGTGGAAGGAATACTCTAGAACGGTGATTATGCAGTGTACGATTAGCGACGTTATTGACCCGAAGGGATGGCATGAGTGGAGCGGTAGTTTTGCGCTTAACACGTTGTTTTACGGTGAGTATCAAAATACGGGAGCGGGGGCTTCGACCGGAGGGAGGGTGACGTGGAAGGGGTTTAGGGTAATCCGGAGTGCCACGGAGGCGGAACGTTTTACCGCGGGTAAATTTATTGGCGGTGGGAGTTGGTTGCGCTCTACGGGCTTTCCTTTCTCTTTAGGATTATGA 1785 48.74 MKETDAMEQPIAAGAGVSNSSDLQKTQKSSKKKLIILTLSSILLVVGAAIGIVAGTTKSPSKDSGKSHAIVKSTCSSTLYPDTCYSAISRSEGAMLKVKNQKDVIEISINITVKAVEENYFRVKKLYGLKNISQREKIALHDCLETIDETLDELHKATVDLNEYPNKKSLNQHADDLKTLLSSAITNQETCIDGFSHDHADKKLRKKLKKGQMEVEHMCSNALAMIKNMTDTDIANYEAKMGITKNRKLMAEEDNSNNDEIQWPEWLSAGDRRLLQSSSVTPNVVVAADGSGDFRTVAAAVAAAPQKSSKRYVIRIKAGVYRENVEVPKKKTNIMFIGDGRRNTIITGSRNVVDGSTTFNSATVAAVGEGFLARDITFQNTAGPSKHQAVALRVGADLSAFYQCDMLAYQDTLYVHSNRQFYINCLVSGTVDFIFGNAAAIFQDCDIHARKPNSGQKNMVTAQGRSDPNQNTGIVIQKSRIGATSDLRPVQKSFPTFLGRPWKEYSRTVIMQCTISDVIDPKGWHEWSGSFALNTLFYGEYQNTGAGASTGGRVTWKGFRVIRSATEAERFTAGKFIGGGSWLRSTGFPFSLGL* 595
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 25934718 25939357 + Chy1G021250.1 Chy01g02125 219306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g02125 594 PANTHER PECTINESTERASE 29 593 - -
Chy01g02125 594 TIGRFAM PME_inhib: pectinesterase inhibitor domain 55 229 IPR006501 GO:0004857
Chy01g02125 594 Pfam Pectinesterase 283 579 IPR000070 GO:0030599|GO:0042545
Chy01g02125 594 Gene3D - 277 594 IPR012334 -
Chy01g02125 594 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 70 230 IPR035513 -
Chy01g02125 594 CDD PMEI-like_3 73 230 - -
Chy01g02125 594 PANTHER PECTINESTERASE 29 593 - -
Chy01g02125 594 Pfam Plant invertase/pectin methylesterase inhibitor 70 225 IPR006501 GO:0004857
Chy01g02125 594 SUPERFAMILY Pectin lyase-like 280 593 IPR011050 -
Chy01g02125 594 SMART PMEI_2 66 225 IPR006501 GO:0004857
Chy01g02125 594 ProSitePatterns Pectinesterase signature 1. 308 327 IPR018040 -
Chy01g02125 594 ProSitePatterns Pectinesterase signature 2. 427 436 IPR033131 -
Chy01g02125 594 Gene3D Invertase/pectin methylesterase inhibitor family protein 66 230 IPR035513 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g02125 Chy-Chr1:25934718 Chy09g01018 Chy-Chr9:12752095 3.91E-162 dispersed
Chy09g00837 Chy-Chr9:11150722 Chy01g02125 Chy-Chr1:25934718 3.80E-144 dispersed
Chy02g00384 Chy-Chr2:2440962 Chy01g02125 Chy-Chr1:25934718 3.11E-151 transposed
Chy11g00054 Chy-Chr11:575542 Chy01g02125 Chy-Chr1:25934718 2.30E-86 transposed
Chy01g02125 Chy-Chr1:25934718 Chy04g00723 Chy-Chr4:8881204 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g02125 K01051 - csv:101212388 1072.38