Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g02133 ATGGTTTTTCATTCTCAAGTTCCTGCTAGATATACTTGTAGGCTTCTTGCAATCCCTTATGGGAGTGTTCCTGAAGATAAATCTAAGAAGGATAATCCAGAGGATCAACAGAGATATCCCTTTCCACAATTAAATTCTTCTGGGCGTTTGGAGGTCCAGGTTTTGTCAAATCCTAGTAAAGATCAGTTTTGTAGGACTCTTGAATCGTATAAACCAAACATTGTTTACTTACAAGGGGAACAACTCGAGAATGATGAAGTTGGTTCTTTAGTATGGAGAGGTGTTGATTTGTCCAATGTAGAAGCGATAAGTGGGCTCTTTAATTATCCGTTGCCCACCACTGTATATTTGGATATAGCAAAGGGAGATGAAGTAGCTGATGCACTTCACTCCAAGGGTATTCCTTATGTCATATACTGGAGAAGCACATTTACTTGTTATGCAGCATGTCATTTTCGTAATGCATTCCTTTCGGTTCTTCAGAGTTCATCTGCTCACACATGGGATGCATTTCAACTTGCACACGCTTCATTTAGGATGTATTGCTTGGGAAACAACTTTGTTCTTCCTAGCAGTAGTCATAAAGAAGTTAGTGAAGATCTGGGTCCACATCTTATAGGGGAACGTTTGAAAATAAATGTCGAACCCCTAGAGAAAGAGGTAGCTGATGATGAAGAAAGTTCATCAGAAGGAATTTCTGTGAACATTCTTGATAATGATGTTGAAATGAGATTTCTTGTATGTGGAGAACCAGGCTCATTGGATGCTTATGTATTAGAAGCTCTGGAGGATGGTCTTAACGCCCTCTTGGACATTGAAATTCGGGGGAGCAAACTGCACGGCAAGTTCAGTGCCCCTCCTCCACCTCTTCAGGCAGGAACACTCTCTAATGGTGTTGTGACTATGCGCTGTGATTTATCTACATGCAGTTTTGCCCACATTTCATTGTTGGTATCAGGTAGTGCACAAGCTTGTTTTGATGATCAGCTATTTGAAAATTATATAAAGAATGAGATTATAGACAGAGGCGAACTAGTGCAGACACTAATCGATAGTGAAGGAAGCAAACACTTATCTGAACCACGTAAATCTACTTCGATTGCTTGTGGGGCAACGGTTTTTGAAGTTAGCTTGAAGGTCCCTTCATGGGCATCTCAGATTTTCAGGCAGTTAGCCCCTGATGTTTCTTATCGAAGTTTAGTGGGACTGGGCATTGCCAGCATCCAGGGTTTGTCTGTTGCTTCTTTTGAGAAGGATGATGCTGAGCGCCTCCTTTTCTTCTGTTCAAGGAAGGAAAATGATTTATTTCTGAGCAATTTAACTGATAGCACACTCCCAAGCTGGTTGAAGCCGCCTGCTCCTAGAAAGAGAGCGAAATATATGAAAGATACAAGCCTTGGTTCTCATGATATTATTGAACATCTGAAGGTATCGCCTGGTAGCAGAATACATGGTGCGAACATGGAAATAGGATCAAGGAATGGTTTTAGCACTCCCATGTTTCCACTTCCAAGAAGGAGAGGCATGAAAATTGCTGCAATGAGGCCCATTCCTCACGTTAATCGCCATAAAATGATCTCTTTTCATGGAATATCTGAGACGGGCGGGCACAATGGAAGCCTGCTAAAAGCTTCTGTTCCTTCTAGTAATCCCACAAAGCATGTGACTGTAGGTTCAGCTTCAGTTTTCCAACAAAAAGTATTTCCAAGTGCGTCTCAATATAAACAAATCATTCCAATGAATCCACTACCTTTGAAAAAGCACGGTTGTGGCAGAAGTCATATACAGGCTTGCTTTGAGGAGGAATTTTTGAAGGATTTGATGCAGTTTTTAGCTCTTCGAGGTCACAGTCGACTTATTCCTCCTGGTGGGCTTGCTGAGTTTCCAGATGCTATACTCAATGGAAAGCGTCTTGACCTTTACAACCTGTACAAGGAGGTGGTTTCAAGAGGTGGCTTCCGTGTTGGAAATGGCATTAATTGGAAAGGACAGATCTTCTCAAAGATGCGCAATTACACCATGACCAATAGAATGACTGGTGTTGGAAACACGCTTAAAAGACATTACGAGACTTATCTTCTAGAGTACGAATTGGCACATGAAGATGTAGATGGTGAATGTTGCCTGTTGTGCCACAGTAGTGCAGCAGGGGACTGGGTGAACTGTGGCATTTGTGGAGAGTGGGCTCACTTCGGTTGCGATAGAAGGCAGGGTCTCGGCGCATTTAAGGATTATGCAAAAACTGATGGCTTAGAATACATATGTCCACACTGTAGTGTTGCTAATTATAAGAAGAAGAAAGTTGCAAATGGTTTATCTCCAGGCTTCTCCTCAAGACCAATATGA 2346 41.94 MVFHSQVPARYTCRLLAIPYGSVPEDKSKKDNPEDQQRYPFPQLNSSGRLEVQVLSNPSKDQFCRTLESYKPNIVYLQGEQLENDEVGSLVWRGVDLSNVEAISGLFNYPLPTTVYLDIAKGDEVADALHSKGIPYVIYWRSTFTCYAACHFRNAFLSVLQSSSAHTWDAFQLAHASFRMYCLGNNFVLPSSSHKEVSEDLGPHLIGERLKINVEPLEKEVADDEESSSEGISVNILDNDVEMRFLVCGEPGSLDAYVLEALEDGLNALLDIEIRGSKLHGKFSAPPPPLQAGTLSNGVVTMRCDLSTCSFAHISLLVSGSAQACFDDQLFENYIKNEIIDRGELVQTLIDSEGSKHLSEPRKSTSIACGATVFEVSLKVPSWASQIFRQLAPDVSYRSLVGLGIASIQGLSVASFEKDDAERLLFFCSRKENDLFLSNLTDSTLPSWLKPPAPRKRAKYMKDTSLGSHDIIEHLKVSPGSRIHGANMEIGSRNGFSTPMFPLPRRRGMKIAAMRPIPHVNRHKMISFHGISETGGHNGSLLKASVPSSNPTKHVTVGSASVFQQKVFPSASQYKQIIPMNPLPLKKHGCGRSHIQACFEEEFLKDLMQFLALRGHSRLIPPGGLAEFPDAILNGKRLDLYNLYKEVVSRGGFRVGNGINWKGQIFSKMRNYTMTNRMTGVGNTLKRHYETYLLEYELAHEDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYICPHCSVANYKKKKVANGLSPGFSSRPI* 782
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 25987979 25992726 + Chy1G021330.1 Chy01g02133 219314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g02133 781 SMART bright_3 598 702 IPR001606 GO:0003677
Chy01g02133 781 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 4 770 - -
Chy01g02133 781 SMART ARID_2 594 697 - -
Chy01g02133 781 CDD PHD_ARID4_like 707 758 - -
Chy01g02133 781 MobiDBLite consensus disorder prediction 24 43 - -
Chy01g02133 781 SUPERFAMILY ARID-like 600 712 IPR036431 GO:0003677
Chy01g02133 781 Gene3D - 593 700 IPR036431 GO:0003677
Chy01g02133 781 ProSiteProfiles ARID domain profile. 597 701 IPR001606 GO:0003677
Chy01g02133 781 SUPERFAMILY FYVE/PHD zinc finger 693 761 IPR011011 -
Chy01g02133 781 CDD ARID 600 697 - -
Chy01g02133 781 Pfam ARID/BRIGHT DNA binding domain 601 697 IPR001606 GO:0003677
Chy01g02133 781 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 701 764 IPR013083 -
Chy01g02133 781 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 4 770 IPR042293 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g02133 Chy-Chr1:25987979 Chy04g00729 Chy-Chr4:8992828 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17384 PF01388 ARID 1.10E-15 CL0123 Chy TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g02133 - - csv:101214243 1580.84