Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g02184 ATGGATGGAGGTGGAGCAGTGCACAATCGCTCAGTTGAAGATGTTTTCAGTGATTTTAGAGGACGGAGAAATGGCGTCATCAAAGCCCTCACCGTAGATGTTGAAGAGTTCTATCAACAATGTGATCCTGAGAAGGAAAATCTATGCTTGTATGGGTTTCCAAATGAAGTATGGGAAGTTAATCTACCTGCTGAAGAAGTACCCCCAGAACTTCCAGAGCCAGCATTGGGTATTAACTTTGCAAGAGATGGCATGCAAGAAAGGGATTGGTTGGCTTTGGTTGCCGTACATAGTGATTCTTGGTTGCTCTCTGTTGCCTACTATTTTGGTGCGAGATTTGGATTTGATAAATCTGATAGGAGGCGGCTATTTAATATGATAAATGATTTGCCAACTGTATTTGAAGTGGTCACCGGTATTGCAAAGAAACAAGTTAAGGAAAAATCATCAACTGCTAATGGTAGCAAATCCAAGTCAAGTTTTAAATCGAGGGAAGCTGAAATGCAAGGAATGTACGCAAGGCAGTCGCAGGCAAGGGAAGAGGTAGAGACATTGTACGAAGAAGATGAAGACGAGCACGGTGACACCTTATGTGGGGCATGTGGTGAGAATTATGCTTCAGATGAATTTTGGATTTGCTGTGATATCTGTGAGAAATGGTTTCATGGGAAGTGCGTTAGAATAACTCCGGCAAAAGCCGAGCACATTAAGCAGTACAAATGCCCATCCTGCAGCAACAAGAGAAGCCGCATTTAA 756 42.86 MDGGGAVHNRSVEDVFSDFRGRRNGVIKALTVDVEEFYQQCDPEKENLCLYGFPNEVWEVNLPAEEVPPELPEPALGINFARDGMQERDWLALVAVHSDSWLLSVAYYFGARFGFDKSDRRRLFNMINDLPTVFEVVTGIAKKQVKEKSSTANGSKSKSSFKSREAEMQGMYARQSQAREEVETLYEEDEDEHGDTLCGACGENYASDEFWICCDICEKWFHGKCVRITPAKAEHIKQYKCPSCSNKRSRI* 252
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 26396867 26399359 + Chy1G021840.1 Chy01g02184 219365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g02184 251 Coils Coil 172 192 - -
Chy01g02184 251 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 6 250 - -
Chy01g02184 251 Pfam PHD-finger 198 247 IPR019787 -
Chy01g02184 251 ProSitePatterns Zinc finger PHD-type signature. 198 244 IPR019786 -
Chy01g02184 251 CDD PHD_AL_plant 197 247 IPR044104 -
Chy01g02184 251 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 188 246 IPR013083 -
Chy01g02184 251 ProSiteProfiles Zinc finger PHD-type profile. 195 247 IPR019787 -
Chy01g02184 251 PANTHER CPG BINDING PROTEIN 6 250 IPR045104 GO:0006355|GO:0042393
Chy01g02184 251 Pfam Alfin 11 139 IPR021998 GO:0006355|GO:0042393
Chy01g02184 251 SMART PHD_3 197 245 IPR001965 -
Chy01g02184 251 SUPERFAMILY FYVE/PHD zinc finger 187 249 IPR011011 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g02184 Chy-Chr1:26396867 Chy06g01612 Chy-Chr6:18609086 2.48E-109 dispersed
Chy01g02184 Chy-Chr1:26396867 Chy10g00423 Chy-Chr10:10085746 6.46E-117 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17391 PF12165 Alfin 7.00E-68 No_clan Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g02184 - - csv:101222322 510.375